Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00996 ATGAGGCGGCAGTTGTTGAAGGTTGTGGCCACCGCTGTGCTTGCAGCTGTGAGCTGCTGCTGTGCTCATGGGGATTGGCTGGTCGGCGTCGGGAGCTTCGACATGACTGGCCCGGCTGCAGAAGTGAATATGATGGGGTATGCTAATATGGATCAGAGCGCTGCGGGAATTCATTTTAGGCTCCGAGCAAGGACGTTTATTGTTGCGAAGAGTGTCGATGGGCCGAGAATTGCGTTTGTTAATTTAGATGCTGGCATGGCTTCGCAATTGGTCACTATTAAGGTTCTCGAGAGGCTCAAAGCTAGTAGTGTGGATGTTGCAGGGGAAGTGGAGAATGCGGGGATCAATAGAAGCCCAAGTGCTTACCTTATGAACCCACCGGAGGAACGAGCTCGATATCCAACCAATGTGGACACGGAAATGAGCCTTGTGAAGGTGGTGGAGGGAGGCAGCGGGAAGAGCCTTGGCGCATTCAGCTGGTTCCCCACGCATGGGACTTCCATGAGTAGAGATAATAAGCTCATCAGTGGGGATAACAAGGGCGCTGCTGCCAGGTTTTTTGAGGACTGGCTCGCCGCCTCTAACCGTTCTACCAGAGCCACCCCCTCCAATAAGTCAGACACTGAAGAGTTGATGAAGAAAGCAGAGACAATAAAAGCGACGGGAGGGAAACGATGCAGCAAAACAAGTAGCCAATCATCAAAAGTGAGAAAGAACGACGGATCTCTGTTCGTCGGAGCATTTTGCCAATCCAACGTCGGCGATGTCACGCCCAACGTTCTTGGAGCCTTTTGCACCGATTCCGGCAAGCCCTGCGATTTCAATCGCTCCTCCTGCCATGGCAGTGATCTTCTATGCGTGGGGCGTGGGCCTGGGTTTCCAGATGAAATTCTAAGCACAAAGATCATTGGGGAGAGGCAGTTCTTGAAAGCGGTTAATTTGTTCACAACAGCAACGGAGAAACTAAGTGGGGAGATTGATTTTCGCCATGTGTATCTGAATTTCACGGATATTGAAGTGGAATTGGATGGGGATAATGTTGTCAAGACATGTCCAGCTGCTCTTGGCCCTGGTTTTGCTGCTGGAACTACGGATGGCCATGGTGTTTTTGGCTTTCAACAGGGTGATACTCAGATCAATAAGTTGTGGAAGAAGTTGCGAGATTCATTGAGGAAACCCAGTGAGTTTCAGGTTGGGTGTCAGAAGCCGAAGACGGTTTTGTTGGACACCGGCGAGATGTTCGAACCTTATGCTTGGGCGCCAGCAATTCTTCCAATTCAAATTCTCAGGCTAGGAAAACTGATCATACTCTCAGTACCAGGAGAGTTCACAACAATGGCGGGGCGACGACTAAGGGAAGCAGTAAAGGAAACTCTGATTAGCAATGGAAATGGAGAGTTTGATGATGATACCCACGTTGTGATTGCAGGGCTTACAAATGCATACTCCCAATATGTCGCTACTTTAGAAGAGTATGAACAACAACGATATGAAGCTGCCTCAACTCTCTATGGACCACACACTCTATCAGCATATATTCAAGAGTTCAAGAAACTAGCAATAGCAATAGCCAAAGGTGAAAAGATTGCCAAGCCAATCGTCTCACCGCCAGACCTTTCCTCCGTCCAACTCCGATTCGTGTCAGACCCGTTCATAGAATCTCCACCGAACGGTGTCAACTTTGGAGACATTCAACAAGACATCAAATTACCAAAAGTTGGTTGGTTCAAAAGAGGGGGCAAACAGAAACCAACTGCCAGATTTTGGAGTGCAAACCCGAGATTCGATCTCTTGACCGAAGGGACCTATGCCGTGGTTGAAAGGCAAGAGAAACGGCGATGGACACCAGTTTATGATGACGATGATTTCTCCTTGGTTTTTAAATGGGCATTAGACAACAACACATTCACCAACAGCTTAGCAACTATCGAATGGGACATCCCAACAGACGCCAATCCAGGTGTGTATCGGTTACGACACTTCGGATCATCAAAGAGTGCAATAAACTCAACCAACATATATTTCACTGGGGCTTCTAGTGCATTTGTAGTGTCCTAA 2058 48.25 MRRQLLKVVATAVLAAVSCCCAHGDWLVGVGSFDMTGPAAEVNMMGYANMDQSAAGIHFRLRARTFIVAKSVDGPRIAFVNLDAGMASQLVTIKVLERLKASSVDVAGEVENAGINRSPSAYLMNPPEERARYPTNVDTEMSLVKVVEGGSGKSLGAFSWFPTHGTSMSRDNKLISGDNKGAAARFFEDWLAASNRSTRATPSNKSDTEELMKKAETIKATGGKRCSKTSSQSSKVRKNDGSLFVGAFCQSNVGDVTPNVLGAFCTDSGKPCDFNRSSCHGSDLLCVGRGPGFPDEILSTKIIGERQFLKAVNLFTTATEKLSGEIDFRHVYLNFTDIEVELDGDNVVKTCPAALGPGFAAGTTDGHGVFGFQQGDTQINKLWKKLRDSLRKPSEFQVGCQKPKTVLLDTGEMFEPYAWAPAILPIQILRLGKLIILSVPGEFTTMAGRRLREAVKETLISNGNGEFDDDTHVVIAGLTNAYSQYVATLEEYEQQRYEAASTLYGPHTLSAYIQEFKKLAIAIAKGEKIAKPIVSPPDLSSVQLRFVSDPFIESPPNGVNFGDIQQDIKLPKVGWFKRGGKQKPTARFWSANPRFDLLTEGTYAVVERQEKRRWTPVYDDDDFSLVFKWALDNNTFTNSLATIEWDIPTDANPGVYRLRHFGSSKSAINSTNIYFTGASSAFVVS 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7995006 8000790 + CmaCh05G009960.1 Cma05g00996 295114

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00996 685 Pfam Neutral/alkaline non-lysosomal ceramidase, N-terminal 26 102 IPR031329 -
Cma05g00996 685 Pfam Neutral/alkaline non-lysosomal ceramidase, N-terminal 108 514 IPR031329 -
Cma05g00996 685 Pfam Neutral/alkaline non-lysosomal ceramidase, C-terminal 516 684 IPR031331 -
Cma05g00996 685 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Cma05g00996 685 Gene3D - 550 685 IPR038445 -
Cma05g00996 685 Coils Coil 475 495 - -
Cma05g00996 685 PANTHER NEUTRAL CERAMIDASE 13 102 - -
Cma05g00996 685 PANTHER NEUTRAL CERAMIDASE 107 685 - -
Cma05g00996 685 PANTHER CERAMIDASE 13 102 IPR006823 GO:0017040|GO:0046514
Cma05g00996 685 PANTHER CERAMIDASE 107 685 IPR006823 GO:0017040|GO:0046514
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00996 K12349 ASAH2; neutral ceramidase [EC:3.5.1.23] - csv:101206698 1021.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00996 Cma-Chr5:7995006 Cma13g00090 Cma-Chr13:673867 0 dispersed
Cma05g00996 Cma-Chr5:7995006 Cma02g00769 Cma-Chr2:4609220 9.21E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g132 . . Bda01g00717 . . . . . Cmo05g01014 . . . . . . . . Bhi04g01549 . . . Hepe08g1468 . Lcy13g2242 Cla08g00967 Cam08g1416 Cec08g0995 Cco08g1118 Clacu08g1119 . Cre08g0903 . . . Cone20ag0044 . . . Cme03g01363 . Blo18g00754 . Bda01g01551 Bpe02g01747 . Bma01g00710 . . . . . Cma05g00996 Car05g00878 . Cpe11g00805 . . . . . . . . . . . . . . . Lsi08g00809 . Chy03g00636 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012388 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00996 Cma_Chr05 FPKM 0.08916 0.104678 0.115375 0.067298 0.040918 0.151775 0.057275 0.272979 0.275066 0.148631