Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00997 ATGGAGCATAAATCGTCGATGGCGAACGGCGGTAAGCCGATCCGGTGCAGAGCGGCGGTGTGCCAGAAGGCTGGGGAGGCGCTGGTGATGGAGGAGATATTGGTAGCTCCGCCGATGGCCTATGAGGTTCGGATACGGATCATTTGCACTTCTCTCTGTCACACCGATGTCAAATACTGGAAGATGAAGGATCCTCCGGGGATTGTTCCAAGAATTTTGGGCCACGAAGCTGTTGGAGAGGTTGAGAGTGTAGGAGACCAAGTGAGTGAAGTAAAGCAAGGAGATATTGTGATCCCAACGTTCCTGGCTGAGTGTGGAGAGTGTAGAGATTGTGCATCAAATAAGAGCAATATTTGCTCTGAACATCCTTACAAACTCTCTCAAGGAATGCCTCGATGTGGGACGAGTAGGTTCACTGATCTTAGTGGAGAGGTTTTGCATCATTTTATGTTTGTGTCAAGTTTCAGCGAGTACACTGTGGTGGATGTTACTCACCTCATTAAGCTTGATCCTATTCTCATCTCTCCCGACAAGGCATGCCTCCTTGGCTGTGGCGTATCGACAGGGGTGGGTGCTGCTTGGAGAACAGCAAATGTGGAAAAGGGATCTACTGTTGCCATTTTTGGACTGGGGACCGTAGGCTTAGCAGTTGCTCAAGGAGCTAGAATATGTGGAGCAGAAAGGATTATTGGGATCGATATCAACCCAGATAAATTAACAATGGCAAAAGAGTGTGGAGTCACAGAGTTCGTTAATTCTAGAAGCATTGGGGATAAATCTGTGAGCCAGGTAATTATCGAGATGACGGACGGAGGTGCAGACTATTGCTTTGAATGCGTTGGACAAAGTTCCTTAATCAAGGAAGCATTTGCATGTTGCAGAAAGGGTCGGGGGAAAACAATTTTATTTGGTGTGGAGGACTCAGTTTCAGTTTTGGGTCTCAAATCTATAGATGTTATTTCTCAAGGGAAAACGGTGATAGGATGCATATATGGTGGACTGAAGCCCAAATCAGACATTCCCACACTCATTCAATGGTACCTAGATAAGAAACTACAATTGGATTTATTTATCTCACACGAGGTTGGCTTTGAAGAAATCAACAAGGCTTTCAATTTGCTAAGTGAAGGGCAATGCCTTAGGTGTGTGATCTGGATGACCAAATGA 1167 45.76 MEHKSSMANGGKPIRCRAAVCQKAGEALVMEEILVAPPMAYEVRIRIICTSLCHTDVKYWKMKDPPGIVPRILGHEAVGEVESVGDQVSEVKQGDIVIPTFLAECGECRDCASNKSNICSEHPYKLSQGMPRCGTSRFTDLSGEVLHHFMFVSSFSEYTVVDVTHLIKLDPILISPDKACLLGCGVSTGVGAAWRTANVEKGSTVAIFGLGTVGLAVAQGARICGAERIIGIDINPDKLTMAKECGVTEFVNSRSIGDKSVSQVIIEMTDGGADYCFECVGQSSLIKEAFACCRKGRGKTILFGVEDSVSVLGLKSIDVISQGKTVIGCIYGGLKPKSDIPTLIQWYLDKKLQLDLFISHEVGFEEINKAFNLLSEGQCLRCVIWMTK 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7997452 8012710 - CmaCh05G009970.1 Cma05g00997 295115

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00997 388 SUPERFAMILY GroES-like 10 197 IPR011032 -
Cma05g00997 388 Gene3D - 19 381 - -
Cma05g00997 388 PANTHER ALCOHOL DEHYDROGENASE 9 385 - -
Cma05g00997 388 Pfam Zinc-binding dehydrogenase 213 347 IPR013149 -
Cma05g00997 388 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 74 88 IPR002328 GO:0008270|GO:0016491
Cma05g00997 388 PANTHER ALCOHOL DEHYDROGENASE-LIKE 7 9 385 - -
Cma05g00997 388 Gene3D - 189 329 - -
Cma05g00997 388 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 174 350 IPR036291 -
Cma05g00997 388 Pfam Alcohol dehydrogenase GroES-like domain 42 169 IPR013154 -
Cma05g00997 388 SUPERFAMILY GroES-like 337 385 IPR011032 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00997 K00121 frmA, ADH5, adhC; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] - csv:101212881 691.419
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00997 Cma-Chr5:7997452 Cma05g01000 Cma-Chr5:8035799 0 dispersed
Cma05g00997 Cma-Chr5:7997452 Cma05g00998 Cma-Chr5:8014630 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g133 Blo01g01352 . . . . . . . Cmo05g01015 . . . . . . . . Bhi04g01548 Tan02g1549 . . Hepe08g1467 . . . . . . . . . . . . Cone20ag0045 . . . Cme03g01364 . . . . . . . . . . . . Cma05g00997 Car05g00879 . Cpe11g00806 . . . . . . . . . . . . . . . Lsi08g00811 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000997 1 5 1 1 0 2 3 2 2 4 2 3 4 4 4 4 3 1 4 3 3 4 3 5 1 4 2 2 4 3 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00997 Cma_Chr05 FPKM 1.322183 1.337218 3.344789 3.093451 2.357297 2.629397 2.853189 2.934455 2.57443 2.622187