Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00998 ATGGAAGATAAGGCGCCGCCACCCACCACCGGACTTCAACCTATCCGTTGTAAAGCTGCTGTGTGTCGTAAGGCGGGGGAGGCACTAGTGATGGAGGAGATAATGGTGGCGTCGCCGATGGCTCATGAAGTTAGGATTAGGATAATATGCACCTCTTTGTGTTACAGTGACATTACCGTCTGGAAGATGAAGGATCCTCCTGGGATTGTTCCTAGAATTCTTGGCCACGAAGCCATCGGAGTGGTTGAGAGTGTAGGGGAGGATGTGAATGAAGTTAAGGAAGGAGATACAGTAATCCCAACATTCATGGCTGACTGTGGGGACTGTAAAGATTGCTTGTCAAATAAGAGCAATTTATGTTCAAAGTTGCCTTTCAGTGTGTCTCCTGGAATGCCCCGATGTGGGACAAGCAGATTCACGGATCTCAATGGAGAGGTCATTCATCATTTTCTGTTTGTTTCAAGTTTCAGTGAATACACCGTGGTAGATGTCGCCAATGTAACCAAAGTAGATCCTGCTATCCCTCCAAATAGGGCATGCCTCCTCAGCTGTGGGGTATCAACAGGGGTTGGTGCAGCATGGAAAACAGCAAATGTGGAGAAGGGATCCACCGTTGCCATATTTGGAATAGGGTCCATTGGTTTAGCTGTCGCTGAAGGAGCTAGACTATCGAAACAGTTTGGAGTCACTGAGTTTGTCAATTCTAGAAGCCTTGGAGATAAATCAGTAAGCCAGGTGATTAATGAAATGACTGGTGGGGGAGCAGATTATTGCTTTGAATGTGTTGGGTTGCCTTCCTTAGTTCAAGAGGCATATGCATGCTGCAGACAGGGTTGGGGAAAAACAGTCGTGTTAGGAGTGCACAAACCAGGATCAGTATTGAGTTTTGACTCGTTGGATGTTCTTCATACTGGAAAGACTCTTGTAGGATCATTGTTTGGGGGTTTAAAGCCAAAATCTGATATTCCTATTCTCCTTCAATGGTACACTGATAAGAAACTTGAGCTGGATAAATTTGTGACGCAAGAAATGGATTTCGAAGACATCAATAAAGCTTTCAGGCTCCAAATCCAAAGATTTTTCTACTCTTTCGCTGCTTCAATCCCAAGAGATTACTCTATCTCTCAGTTAAGACGTCGTCGGAGAGGACGGACTCTCATCACCGACAAACTCCTTCCGACCTCCGTCATGGAAGATAACTCCTCGGCTGCAACTGGACTTCACTCTATCCGCTGCAGAGCTGCTGTCTGCCGGAAGCCTGGGGAGCCGCTAGTGATTGAGGAGATAATTGTGGCGCCGCCTATGGCTCATGAAGTTCGGATTCGGATAATATGTACCTCTTTGTGTCACAGCGACCTCACATTCTGGAAGATGAAGGATTTTCCAGGGATTGTTCCTAGAATTCTTGGCCACGAGGCAATCGGTGTGGTTGAGAGTGTAGGGAAGGATGTGAATGAAGTTAAGAAAGGAGATACAGTAATCCCAACATTCATGGCTGACTGTGGGGAATGTGAAGATTGCTTGTCAAATAAGAGCAATCTATGTTCAAAATTGCCTTTCAGTGTGTCTCCCGGAATGCCCCGATGTGGGACAAGCAGATTCACAGATCTCAATGGAGAGGTCATTCATCATTTTCTGTTTGTATCAAGTTTCACTGAATACACGGTGGTGGATATTGCCAATGTAACCAAAGTAGATCCTGCAATCCCTCCAAACAGGGCATGCCTTCTTAGTTGTGGGGTAACAACAGGGGTTGGTGCGGCATGGAGAACAGCAAATGTAGAGAAGGGATCCACTGTCGCCATATTTGGACTAGGGTCCATAGGTTTAGCTGTTGCGGAAGGAGCAAGAATATGTGGAGCAAGCAGGATTATTGGTATAGATGTCAACCCAGATAAATTTGAAACTGGGAAGAAGTTTGGAGTCACTGAGTTCGTTAATCCCAGAAGTCTTGGGGATAAATGCGTGAGCCAGGTGATTATTGAAATGACTGGTGGAGGTGCAGACTATTGCTTTGAATGCGTTGGAATGGCTTCCTTAGTTCAAGAAGCATTCACATGCTGTAGACAGGGTTGGGGTAAAACAATCGTGGTGGGAGTGGACAAGCCTGGATCACTATTGAATTTTAGCTCTTACGAAGTCCTTCATCGTGGGAAGACTGTCATGGGATCCTTGTTCGGGGGAACAAAGCCCAAATCAGATATTCCCATCCTCCTTAACTGGTACACTGATAAGAAACTTGAGCTGGATAAATTCGTGACTCACGAAGTAAGTTTTGAAGATATCAACAAAGCCTTTAATCTGCTAATTGAAGGAAAGTCCTTGAGATCTGTGATTTGGATGAACAATTGA 2352 45.32 MEDKAPPPTTGLQPIRCKAAVCRKAGEALVMEEIMVASPMAHEVRIRIICTSLCYSDITVWKMKDPPGIVPRILGHEAIGVVESVGEDVNEVKEGDTVIPTFMADCGDCKDCLSNKSNLCSKLPFSVSPGMPRCGTSRFTDLNGEVIHHFLFVSSFSEYTVVDVANVTKVDPAIPPNRACLLSCGVSTGVGAAWKTANVEKGSTVAIFGIGSIGLAVAEGARLSKQFGVTEFVNSRSLGDKSVSQVINEMTGGGADYCFECVGLPSLVQEAYACCRQGWGKTVVLGVHKPGSVLSFDSLDVLHTGKTLVGSLFGGLKPKSDIPILLQWYTDKKLELDKFVTQEMDFEDINKAFRLQIQRFFYSFAASIPRDYSISQLRRRRRGRTLITDKLLPTSVMEDNSSAATGLHSIRCRAAVCRKPGEPLVIEEIIVAPPMAHEVRIRIICTSLCHSDLTFWKMKDFPGIVPRILGHEAIGVVESVGKDVNEVKKGDTVIPTFMADCGECEDCLSNKSNLCSKLPFSVSPGMPRCGTSRFTDLNGEVIHHFLFVSSFTEYTVVDIANVTKVDPAIPPNRACLLSCGVTTGVGAAWRTANVEKGSTVAIFGLGSIGLAVAEGARICGASRIIGIDVNPDKFETGKKFGVTEFVNPRSLGDKCVSQVIIEMTGGGADYCFECVGMASLVQEAFTCCRQGWGKTIVVGVDKPGSLLNFSSYEVLHRGKTVMGSLFGGTKPKSDIPILLNWYTDKKLELDKFVTHEVSFEDINKAFNLLIEGKSLRSVIWMNN 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8014630 8027286 + CmaCh05G009980.1 Cma05g00998 295116

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00998 783 Pfam Zinc-binding dehydrogenase 219 329 IPR013149 -
Cma05g00998 783 Pfam Zinc-binding dehydrogenase 608 741 IPR013149 -
Cma05g00998 783 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 470 484 IPR002328 GO:0008270|GO:0016491
Cma05g00998 783 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 75 89 IPR002328 GO:0008270|GO:0016491
Cma05g00998 783 SUPERFAMILY GroES-like 13 196 IPR011032 -
Cma05g00998 783 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 569 744 IPR036291 -
Cma05g00998 783 SUPERFAMILY GroES-like 408 592 IPR011032 -
Cma05g00998 783 SUPERFAMILY GroES-like 731 780 IPR011032 -
Cma05g00998 783 Pfam Alcohol dehydrogenase GroES-like domain 437 564 IPR013154 -
Cma05g00998 783 Pfam Alcohol dehydrogenase GroES-like domain 42 169 IPR013154 -
Cma05g00998 783 Gene3D - 20 355 - -
Cma05g00998 783 Gene3D - 189 311 - -
Cma05g00998 783 Gene3D - 584 724 - -
Cma05g00998 783 PANTHER ALCOHOL DEHYDROGENASE 407 780 - -
Cma05g00998 783 PANTHER ALCOHOL DEHYDROGENASE 11 358 - -
Cma05g00998 783 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 174 332 IPR036291 -
Cma05g00998 783 PANTHER ALCOHOL DEHYDROGENASE-LIKE 7 407 780 - -
Cma05g00998 783 PANTHER ALCOHOL DEHYDROGENASE-LIKE 7 11 358 - -
Cma05g00998 783 Gene3D - 415 776 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00998 K00121 frmA, ADH5, adhC; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] - csv:101206456 702.975
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00998 Cma-Chr5:8014630 Cma05g01000 Cma-Chr5:8035799 0 dispersed
Cma05g00997 Cma-Chr5:7997452 Cma05g00998 Cma-Chr5:8014630 0 tandem
Cma05g00998 Cma-Chr5:8014630 Cma05g00999 Cma-Chr5:8028042 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g134 . . . . . . . . Cmo05g01018 . . . . . . . . Bhi04g01547 Tan02g1550 . . Hepe08g1466 . . . . . . . . . . . . . . . . Cme03g01365 Blo17g00721 . Bda08g01180 . . . . . . . . . Cma05g00998 Car05g00880 . Cpe11g00807 . . . . . . . . . . . . . . . Lsi08g00814 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000997 1 5 1 1 0 2 3 2 2 4 2 3 4 4 4 4 3 1 4 3 3 4 3 5 1 4 2 2 4 3 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00998 Cma_Chr05 FPKM 0.398523 0.0 0.883658 0.561392 3.319773 3.234359 3.361835 1.045013 1.006274 1.030788