Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01038 ATGTTTGATTGTGGTTACAAGTCACAACTGATGGGTGGTCAGCGAGAAAAGTTTGTGAGGTTGGATGACTTGGACTCCAGATTGTCATCGCCTTCTGATAGTGGAATGAGAAGATGTGGTTTTAATATAGATGGATTTAACCGTACAGTCAATGGAAATGATAAATCATCTGGATCCTTTAAGAGAGGAATGAGGAAAGGATCTGAAGGACTTAAATCAATTGGCCGATCACTCAAGTTTGGGGTGTCTCGAGCTGTATTTCCAGAGGATCTTAAAGAGTCAAAGATGAAGATCTTCGACCCTCAAGACAAACTGCTCTTATTTTTCAATAAACTTTTTGTCATATCCTGTTTTTTGGCAATATCTGTGGACCCACTGTTCTTTTATGTTCCTGTTATTAATGGAAACTCAAACTGTCTTGGCATTGATAGAAAGCTGGCAATTACAGTGACAACATTGCGGACAATTATTGATGTTTTCTATCTTGTCCACATGGCTCTCCAATTCCGGACAGCTTATATTGCTCCATCATCTCGGGTGTTTGGGAGAGGTGAACTTGTGATTGATCCTACACAAATTGCAAAGCGATACTTGCGGCGGTATTTCATCATTGATTTGGTGTCTGTGCTGCCCCTTCCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAAAGGTTCCGATGTATATGTGACAAAACAAGCCCTTCTTTTAATTGTATTCCTACAGTATATCCCAAGATTTCTTAGAGCGGTACCATTGACTTCAGAATTGAAAAGGACAACAGGTGTATTTGCTGAAACTGCTTGGGCAGGTGCTGCATATTATTTGCTATTATATATGCTTGCAAGTCATATAGTTGGAGCATTATGGTACTTATTAGCTGTGGAACGCAATGATACATGTTGGCAGAAGTATTGTAAGGCCCCGATTTGCAGGAAAGATTTCTTATATTGTGGTAACCAAGGCATGGAAGGTTATGCAACTTGGAACCAGACAGGTGTGGATGGCATTAAGTCAAGTTGCAAACCTGCTGATGATAATGATCAGTTTGATTTTGGAATCTTTAAACAGGCTCTGTCCTCTGGTATTGCCGCATCTAAGAGTTTTATCGTTAAATATTGTTACTGTCTGTGGTGGGGGCTACAAAACTTAAGTACGCTTGGGCAGGGGCTTCAAACAAGCACGTACCCGGGTGAAGTGATCTTTTCTATTGCATTAGCTGTACTTGGTCTCATCCTCTTTGCTCTTCTTATTGGCAACATGCAGACTTATCTTCAATCTCTAACTATAAGACTTGAGGAAATGAGGGTGAAAAAGCGTGATTCGGAGCAGTGGATGCACCACCGCTTGCTGCCACAGGAGCTTCGGGAGAGAGTCAGGCGTTACGATCAGTACAAGTGGTTGGAGACCCGTGGGGTGGATGAACAGAGTTTGGTTCAAACTTTACCCAAGGATCTTAGGAGAGATATTAAGCGGCATCTTTGTCTGGCTTTAGTAAGAAGGGTTCCTCTGTTTGAAAACATGGACGAAAGGCTGCTTGATGCTATTTGTGAGCGGCTGAAACCATGTTTGTTTACGGAGTACACTTACATAGTCCGTGAAGGTGATCCAGTTGATGAGATGCTTTTCATTATACGTGGTCGGCTCGAGAGTGTGACCACGGATGGCGGGCGGAGTGGTTTTTTCAACCGTACCTTTTTGAAAGAAGGTGATTTTTGTGGTGAGGAGCTTTTGACCTGGGCTCTAGACCCGAAATCTGGTTCGAATCTTCCAACTTCTACAAGGACAGTAAAGGCTATTACAGAGGTTGAGGCTTTCGCCCTTGTTGCTGAAGAGTTGAAATTCGTGGCCAGTCAGTTCAGGCGCCTTCACAGTAGACAGGTACAACATACCTTCCGATTTTACTCGCAGCAATGGAGGACCTGGGCAGCTTGCTTCATCCAAGCAGCGTGGCGTCGGTATTCCAAGAGAAAGTCTTTAGAACTTCGTCAAAAGGAAGAAGTTGCAGCAGAAGAATCTGAGGGAGCTCAAACTACTACGAGCGGTGGATCTTATAGTATTCGTGCAACGTTCTTAGCTTCCAAATTTGCTGCCAATGCTCTCCGTGGCGTTCAGCGATATCGAAACGCAAAAAGCGCTCAGGAATTAATAAAATTGCAGAAGCCTCCAGAGCCAGATTTTACCGCTGATGATGCGGATTGA 2205 43.36 MFDCGYKSQLMGGQREKFVRLDDLDSRLSSPSDSGMRRCGFNIDGFNRTVNGNDKSSGSFKRGMRKGSEGLKSIGRSLKFGVSRAVFPEDLKESKMKIFDPQDKLLLFFNKLFVISCFLAISVDPLFFYVPVINGNSNCLGIDRKLAITVTTLRTIIDVFYLVHMALQFRTAYIAPSSRVFGRGELVIDPTQIAKRYLRRYFIIDLVSVLPLPQIVVWRFLQRSKGSDVYVTKQALLLIVFLQYIPRFLRAVPLTSELKRTTGVFAETAWAGAAYYLLLYMLASHIVGALWYLLAVERNDTCWQKYCKAPICRKDFLYCGNQGMEGYATWNQTGVDGIKSSCKPADDNDQFDFGIFKQALSSGIAASKSFIVKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAVLGLILFALLIGNMQTYLQSLTIRLEEMRVKKRDSEQWMHHRLLPQELRERVRRYDQYKWLETRGVDEQSLVQTLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEYTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRTFLKEGDFCGEELLTWALDPKSGSNLPTSTRTVKAITEVEAFALVAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKSLELRQKEEVAAEESEGAQTTTSGGSYSIRATFLASKFAANALRGVQRYRNAKSAQELIKLQKPPEPDFTADDAD 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8307756 8324533 + CmaCh05G010380.1 Cma05g01038 295156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01038 734 Gene3D Helix hairpin bin 433 496 - -
Cma05g01038 734 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 12 731 - -
Cma05g01038 734 ProSiteProfiles IQ motif profile. 641 670 IPR000048 GO:0005515
Cma05g01038 734 SMART cnmp_10 505 636 IPR000595 -
Cma05g01038 734 PRINTS EAG/ELK/ERG potassium channel family signature 154 164 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma05g01038 734 PRINTS EAG/ELK/ERG potassium channel family signature 165 174 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma05g01038 734 PRINTS EAG/ELK/ERG potassium channel family signature 282 292 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma05g01038 734 PRINTS EAG/ELK/ERG potassium channel family signature 400 411 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma05g01038 734 PRINTS EAG/ELK/ERG potassium channel family signature 418 427 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma05g01038 734 PRINTS EAG/ELK/ERG potassium channel family signature 468 475 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma05g01038 734 ProSiteProfiles cAMP/cGMP binding motif profile. 505 589 IPR000595 -
Cma05g01038 734 SUPERFAMILY cAMP-binding domain-like 435 625 IPR018490 -
Cma05g01038 734 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 12 731 - -
Cma05g01038 734 Pfam Ion transport protein 108 431 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cma05g01038 734 Pfam Cyclic nucleotide-binding domain 530 615 IPR000595 -
Cma05g01038 734 SUPERFAMILY Voltage-gated potassium channels 101 427 - -
Cma05g01038 734 Gene3D Jelly Rolls 503 623 IPR014710 -
Cma05g01038 734 CDD CAP_ED 505 636 IPR000595 -
Cma05g01038 734 Gene3D - 108 430 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01109 Cma-Chr2:6588999 Cma05g01038 Cma-Chr5:8307756 0 dispersed
Cma05g01038 Cma-Chr5:8307756 Cma11g00421 Cma-Chr11:2074262 0 dispersed
Cma14g02105 Cma-Chr14:14540281 Cma05g01038 Cma-Chr5:8307756 0 dispersed
Cma18g01305 Cma-Chr18:10032716 Cma05g01038 Cma-Chr5:8307756 0 dispersed
Cma04g02791 Cma-Chr4:18711935 Cma05g01038 Cma-Chr5:8307756 6.20E-134 transposed
Cma11g01051 Cma-Chr11:5778938 Cma05g01038 Cma-Chr5:8307756 0 transposed
Cma12g00858 Cma-Chr12:6341807 Cma05g01038 Cma-Chr5:8307756 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01038 K05391 - csv:101219180 1358.97