Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01058 ATGTACAAGATGGGGAATGATCTAAACCAAGAGCTATCAAAGAGAACAAGCATACTTGGTCTAAAGGTATGGGAAATCATTGGAATTGGAGTAGGCCTATTCATAATCTCAATCCTTTGCATACTCTCATTCTTTTTAACCTCACGCAACAAGAACTCAAGAACATCATCATCAGCAGCCAACGCCAACACCAACACCAACGTCTTATGTCCTCTAACACAAATCCCATCACACTCAAAGGACATAAAGGCAGTTCATATCACCACTTACAGCACTGAATCAGGATCATCATTTCATCCATTGAGCTATGGCTATGGATCACAATCAGGGGATGAAGGCAGCTCTGGCACTGTCACGACGACGACAATGAACCGACGTTCGACGTCGCCGATGTCAGGTCTGCTAGAGATGTCGCGATTGGGATGGGGGTATTGGTTTACATTAAGGGAGCTGGATTTGGCTACTAATTTGTTCTCCGAAGAGAATTTGATTGGGGAAGGAGGGTATGGAGTTGTGTATAAAGGGAGGTTGTTGAATGGGATATCAGTGGCTGTTAAGAAGATTTTTAATGGACAAGGCCAAGCTGAGATGGAATTTAGAGTGGAAGTTGAGGCAATTGGGCATGTTAGGCATAAGAATCTTGTTCGTCTATTGGGGTACTGCGTCGAAGGGACTCATAGGATGCTGGTGTATGAGTACATAAACAATGGAAGCTTAGAGCTATGGCTACATGAAGGAATGGGAGAGAATAGATACCTTACATGGGAGGCTCGAATGAAGATCATGTTGGGGACAGCCAAAGGGATTGCATACTTGCACGAAGCCATTGAGCCAAAGGTGGTGCATCGAGACATCAAAGCTAGCAACATACTAATAGATGAAAACTTCAATGCCAAAGTATCCGACTTCGGGTTGGCAAAGTTGATGGAGGTCGGAAAGACTCATGTTACGACTCGAGTTATGGGGACATTTGGGTATGTGGCTCCTGAGTACGCGAATACTGGACTTTTGAATGAGAAGAGCGATGTGTATAGCTTTGGAGTTGTATTGGTGGAAACAATCACGGGAAGAGATCCTGTTGACTATGGACGTCCGCCCAAACAGGTAAATGTGGTGGATTGGCTGAAAATGATGATCGGAAGTAGGCGATGTGAAGAAGTGGTAGATCCAAAAATAGGGATCGAAGGAAGGCCATCCACAAGAGGGTTGAAAAGAGCTCTATTGGTTGCTTTGAGGTGTGTGGATCCAAATTACGAGAAGAGACCAAAGATGAGCCAAGTTGTTCGGATGCTCGAATCTCAAGATAGTTTTTCTCATACACGTCCGAAATAG 1332 44.37 MYKMGNDLNQELSKRTSILGLKVWEIIGIGVGLFIISILCILSFFLTSRNKNSRTSSSAANANTNTNVLCPLTQIPSHSKDIKAVHITTYSTESGSSFHPLSYGYGSQSGDEGSSGTVTTTTMNRRSTSPMSGLLEMSRLGWGYWFTLRELDLATNLFSEENLIGEGGYGVVYKGRLLNGISVAVKKIFNGQGQAEMEFRVEVEAIGHVRHKNLVRLLGYCVEGTHRMLVYEYINNGSLELWLHEGMGENRYLTWEARMKIMLGTAKGIAYLHEAIEPKVVHRDIKASNILIDENFNAKVSDFGLAKLMEVGKTHVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVVLVETITGRDPVDYGRPPKQVNVVDWLKMMIGSRRCEEVVDPKIGIEGRPSTRGLKRALLVALRCVDPNYEKRPKMSQVVRMLESQDSFSHTRPK 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8420226 8423649 + CmaCh05G010580.1 Cma05g01058 295176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01058 443 CDD STKc_IRAK 164 432 - -
Cma05g01058 443 Gene3D Transferase(Phosphotransferase) domain 1 234 441 - -
Cma05g01058 443 Gene3D Phosphorylase Kinase; domain 1 118 233 - -
Cma05g01058 443 PANTHER OS01G0323000 PROTEIN 8 436 - -
Cma05g01058 443 ProSitePatterns Protein kinases ATP-binding region signature. 164 187 IPR017441 GO:0005524
Cma05g01058 443 SUPERFAMILY Protein kinase-like (PK-like) 131 432 IPR011009 -
Cma05g01058 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672|GO:0006468
Cma05g01058 443 SMART serkin_6 158 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g01058 443 MobiDBLite consensus disorder prediction 107 129 - -
Cma05g01058 443 ProSiteProfiles Protein kinase domain profile. 158 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g01058 443 Pfam Protein kinase domain 159 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g01058 443 PANTHER OS01G0323000 PROTEIN 8 436 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02224 Cma-Chr4:15514897 Cma05g01058 Cma-Chr5:8420226 8.38E-59 dispersed
Cma05g01058 Cma-Chr5:8420226 Cma11g01962 Cma-Chr11:12853356 0 dispersed
Cma15g00805 Cma-Chr15:4059551 Cma05g01058 Cma-Chr5:8420226 6.21E-62 dispersed
Cma17g00398 Cma-Chr17:2259795 Cma05g01058 Cma-Chr5:8420226 4.62E-156 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68592 PF00069 Pkinase 8.50E-48 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01058 - - cmo:103493978 688.337