Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01062 ATGGAGGGAGATATCACAGCAATCATGGGGATGGTTATATTGCAATTTTGCTACGCTGGTTTAAGCATTACCTCAAAGCTAGCGATGCAATCAGGAATGAGCCCTCTTGTTCTCCTCACTTACAGGCAATTTTTTGGCACTTTGGCCATTGCTCCCTTTGCTTTCTTTACTGAAAGGAAAACAAGGCCAAAGATCACTTTCCCTGTTCTTGTTCAAATCTTTATCTGTTCTTTATCTGGAGCCACAGCGAACCAGATATTCTTCTTTGTTGGGTTGAAATGCACAAACCCAACCGTTTCAAGTGCTATGGCTAATGTTCTTCCTGCTGCTACTTTTATTCTTGCTGTTGTTTTCAGACAAGAGAGTGTGAGAATCAAGACCAAGCCAGGTTTTGCAAAGGTGATGGGAACAATTGTGTGTATATGTGGAGCAATGCTGCTATCTTTCTACCATGGACACACCATTGGCTTAGGTGAATCAAAAATTCACTGGCCTTATGTCGAGAGGATCATGAGCAAAACAAACCCGACGAACCGTCAAGAAAACCGAACCCTCGGCTCGGTTTTGTTGCTTTGCAGCTCGTTCTCTTGGGCGTTATGGTTCGTCATTCAAGCAAGATTGAGTGTCAAGTTTAAAGCTCCCTATACAAGTACAACGTTGTTGTGCTTCATGGCCTTTTTCCAATGTGGACTCATAGCTGTAATTTCCGAGCACAATGTCGCTGCTTGGTCATTAAACAGTCCGATCCGACTCATCTCAGCCCTTTACACGGGAATTGTGTGTTCTGGATTGACATTTAGCATCACTTCTTGGATTATACAAAGGAAAGGGCCTCTATATGTCTCAATTTTCACCCCATTGTTGCTTATCATTGTGGCCATCTTTAGCTGGACTCTCCTCCACGAACAGCTCTACATCGGAACTGTTCTTGGCTCTATTTTGATAATCATTGGGCTATATGGAGTGCTATGGGGAAAGTCCAAAGAGATGAAAGTAGAAGAGGAAGACAAGGTGGAAAAGGCAACAAATGGGAGTCAAAAAGATGACGTGGAATTGCAAATCATAAACATCAAATAA 1077 42.62 MEGDITAIMGMVILQFCYAGLSITSKLAMQSGMSPLVLLTYRQFFGTLAIAPFAFFTERKTRPKITFPVLVQIFICSLSGATANQIFFFVGLKCTNPTVSSAMANVLPAATFILAVVFRQESVRIKTKPGFAKVMGTIVCICGAMLLSFYHGHTIGLGESKIHWPYVERIMSKTNPTNRQENRTLGSVLLLCSSFSWALWFVIQARLSVKFKAPYTSTTLLCFMAFFQCGLIAVISEHNVAAWSLNSPIRLISALYTGIVCSGLTFSITSWIIQRKGPLYVSIFTPLLLIIVAIFSWTLLHEQLYIGTVLGSILIIIGLYGVLWGKSKEMKVEEEDKVEKATNGSQKDDVELQIINIK 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8438982 8441663 + CmaCh05G010620.1 Cma05g01062 295180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01062 358 SUPERFAMILY Multidrug resistance efflux transporter EmrE 247 328 - -
Cma05g01062 358 PANTHER WAT1-RELATED PROTEIN 7 353 - -
Cma05g01062 358 Pfam EamA-like transporter family 7 148 IPR000620 GO:0016020|GO:0016021
Cma05g01062 358 Pfam EamA-like transporter family 185 323 IPR000620 GO:0016020|GO:0016021
Cma05g01062 358 PANTHER WAT1-RELATED PROTEIN 7 353 IPR030184 GO:0016021|GO:0022857
Cma05g01062 358 SUPERFAMILY Multidrug resistance efflux transporter EmrE 41 151 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01062 Cma-Chr5:8438982 Cma11g01226 Cma-Chr11:7876255 4.15E-154 dispersed
Cma05g01062 Cma-Chr5:8438982 Cma18g00826 Cma-Chr18:7215575 5.56E-84 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01062 - - csv:101217670 546.969