Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma05g01068 | ATGGACGCGGAGGAATCGAAGAACTCGAGAAGGTCGTTGCAGAAGCCGAATAAACGCCTCCAAATTGCTTCAAATGTTAGTGCGGAAGGCAGAGAACGGAGGTGGAGAACCGAGGTCGAGCAACAGATCTACTCCTCGAGACTCGCGGAAGCGCTCCAGAGAGTCAGCCGCCAGCGGTCCTCGCCGCATGCGAGATCTACTATCAACGGACGGCTTGTTCGTGAAACTGCAGATTGCGTCCTCGCCGCTGCCGCCAAGGGGAGGACTCGATGGAGTCGCGCGATTCTGGCAAATCGATTCCGCCAGAGGCTCGCGAGACGTCGGAGGACGAAGAAATCGATTGGCCGTAAACCGTCGCGCGTGGAGGAGGTGAAGAACAGGAAGTTGCCGGCGGTGCAGAGGAAGGTGAAAATTCTTGGCCGGTTGGTTCCAGGTTGCCGGAAACTCTCATTCCCAAACCTTCTGGAAGAAGCGACCGATTACATATCGGCTTTAGAGATGCAGGTAAAAGCCATGGCGGCGCTAGCCGAAATTCTCGCCGGAGCTCAAAGTAATTTGCTCCCAATCTCGAACGATTCTTGA | 582 | 55.5 | MDAEESKNSRRSLQKPNKRLQIASNVSAEGRERRWRTEVEQQIYSSRLAEALQRVSRQRSSPHARSTINGRLVRETADCVLAAAAKGRTRWSRAILANRFRQRLARRRRTKKSIGRKPSRVEEVKNRKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMAALAEILAGAQSNLLPISNDS | 193 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 8470923 | 8471504 | - | CmaCh05G010680.1 | Cma05g01068 | 295186 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma05g01068 | 193 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Cma05g01068 | 193 | PANTHER | TRANSCRIPTION FACTOR BHLH149 | 12 | 183 | - | - | |
| Cma05g01068 | 193 | PANTHER | TRANSCRIPTION FACTOR IBH1-LIKE 1 | 12 | 183 | IPR044660 | GO:0006355 | |
| Cma05g01068 | 193 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 116 | 165 | IPR011598 | GO:0046983 | |
| Cma05g01068 | 193 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 134 | 184 | IPR036638 | GO:0046983 | |
| Cma05g01068 | 193 | CDD | bHLH_AtIBH1_like | 121 | 176 | IPR044549 | GO:0006355 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma05g01068 | Cma-Chr5:8470923 | Cma08g01285 | Cma-Chr8:7781060 | 1.28E-44 | dispersed | |
| Cma10g01164 | Cma-Chr10:8345872 | Cma05g01068 | Cma-Chr5:8470923 | 7.60E-62 | wgd | |
| Cma17g00376 | Cma-Chr17:2094890 | Cma05g01068 | Cma-Chr5:8470923 | 3.62E-43 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma05g01068 | - | - | csv:101222722 | 220.705 |