Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01073 ATGGAAGAGTTTTACAGGCTTAACAACCCTGTCATGTCCTCTTATTCTAATGGTGTTCTTGGAGGTGAAGCCATTGCTAGCACCAGCTGTGGTGACATTCATGAAGCTCTAATGGTGGATGATGAACTGCTTCACCTTGAAGCAGAGCCCACCACTGGCTTGAACATGTCTGACATGATCAAGACTCAGATTATCAACCATCCCCTTTACCCAAAATTGGTTTCTGCTTACATTGAATGCCAAAAAGTTGGAGCTCCACCACAAGTGGCTTCTCTTCTTGAAGAAATTGGCCGTGAAAATCATCCTTCTAGATCTTGTATTGAGTTGGGAGCTGATCCTCAACTGGACAACTTTATGGAGTCATACTGTGAGGTGCTTCATCAATATAAGAATGAGCTATCCAAGCCATTTGATGAAGCAGCCATGTTCTTGACCAACATTGAATTGGAGCTAAGCAACCTGTGTAAAGGATCGTTTACTGCGACGTCCGAATCTCGCTCTGCCATCGATGACGAAGTAGCCGGGACTCCAGAGGAAGAACCGAGCAGCTACGGGGAGGTAGAAACGTCAGGGAATCACGAGCCGTTCAGCACACGAAAAACAAACCAAGACCTCAAAGAAATGCTGCTAAAGAAGTACAGTGGGTATCTAAGCAGTTTGAAGAAGGAATTCTTGAAGAAGAGGAAGAAGGAGAAGCTGCCAAAGGATGCAAGAATGGCTCTACTTGAGTGGTGGAGTGCTCATTATAAATGGCCTTATCCTACGGAAGAGGAAAAATCAAAACTCTCTGTTATCACTGGTTTGGATCAAAAGCAGATCAATAACTGGTTCATAAACCAGAGAAAGCGGCATTGGAAGCCGCCCGAAGATATGCGGTTCATGCTCATGGATGGAGCCGGGGTCGGGGACGGGGACGGGGACGGGGACGGGGGATGCATCAAAGGATTGAATCAGGCCATATAA 963 46.21 MEEFYRLNNPVMSSYSNGVLGGEAIASTSCGDIHEALMVDDELLHLEAEPTTGLNMSDMIKTQIINHPLYPKLVSAYIECQKVGAPPQVASLLEEIGRENHPSRSCIELGADPQLDNFMESYCEVLHQYKNELSKPFDEAAMFLTNIELELSNLCKGSFTATSESRSAIDDEVAGTPEEEPSSYGEVETSGNHEPFSTRKTNQDLKEMLLKKYSGYLSSLKKEFLKKRKKEKLPKDARMALLEWWSAHYKWPYPTEEEKSKLSVITGLDQKQINNWFINQRKRHWKPPEDMRFMLMDGAGVGDGDGDGDGGCIKGLNQAI 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8500812 8504736 + CmaCh05G010730.1 Cma05g01073 295191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01073 320 MobiDBLite consensus disorder prediction 183 198 - -
Cma05g01073 320 Pfam KNOX2 domain 109 155 IPR005541 GO:0003677|GO:0005634
Cma05g01073 320 Pfam ELK domain 204 225 IPR005539 GO:0003677
Cma05g01073 320 ProSiteProfiles ELK domain profile. 204 224 IPR005539 GO:0003677
Cma05g01073 320 CDD homeodomain 236 287 IPR001356 GO:0003677
Cma05g01073 320 Pfam Homeobox KN domain 244 283 IPR008422 GO:0003677|GO:0006355
Cma05g01073 320 SMART HOX_1 226 291 IPR001356 GO:0003677
Cma05g01073 320 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677|GO:0005634
Cma05g01073 320 ProSitePatterns 'Homeobox' domain signature. 262 285 IPR017970 GO:0000981|GO:0006355
Cma05g01073 320 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 298 - -
Cma05g01073 320 SMART KNOX1_2 58 102 IPR005540 GO:0003677|GO:0005634
Cma05g01073 320 ProSiteProfiles 'Homeobox' domain profile. 224 287 IPR001356 GO:0003677
Cma05g01073 320 SMART KNOX2_2 105 156 IPR005541 GO:0003677|GO:0005634
Cma05g01073 320 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 1 298 - -
Cma05g01073 320 SMART ELK_2 204 225 IPR005539 GO:0003677
Cma05g01073 320 Gene3D - 229 290 - -
Cma05g01073 320 MobiDBLite consensus disorder prediction 166 200 - -
Cma05g01073 320 SUPERFAMILY Homeodomain-like 226 296 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01073 Cma-Chr5:8500812 Cma18g00787 Cma-Chr18:6949757 5.32E-81 dispersed
Cma12g01024 Cma-Chr12:8157527 Cma05g01073 Cma-Chr5:8500812 3.32E-159 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35101 PF03791 KNOX2 7.60E-21 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01073 - - csv:101203403 526.168