Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01087 ATGGCGTCGAGGAATCGGACTTTAATCTTTAGGAAATACAGGGACGCGTTGAGGAGTGTGAGGGTTCCTACCGGCTCTTCGCCTGCTTCTGCATCGCCATCGACTAGCTCTGGCACTGGTGGACCGGTGATTGAATTGGTTAGCTCGTCGTTGTTGCATCCGAATCGGTCGTACGCTCCCTTAAGTACTGAGGATCCGGGTAATTCAAGTAAGGGTGCTCTTACTGTGGGTCTACCTCCGGCTTGGGTGGATGTATCCGAAGAAATAGCTGCAAATGTGCAGCGTGCACGAGTAAAGATGATGGAGTTAGCTAAAGCTCATGCAAAGGCTTTAATGCCTTCATTTGGAGATGATAAAGAAGATCAACGGTTAATTGAATCTCTCACGCAAGACATAACTAACTTAATCAAGAAATCAGAGAAGGGGCTCAAGAGATTTTCCGTAGCTGGACCTTCAGAAGATTCCAATATCAGAAAAAATGTTCAGCGATCTCTTGCCACTGACCTTCAGAACCTCTCTATGGAGCTTCGCAAGAAACAGTCAACTTATTTAAAGCGCCTACGGCAGCAAAAAGAGGAAGGTCAAGATGGGATTGACATAGAGATGAATCTAAATGGAAATAGGTCGAGAATGGAGGATGACGATGATTTAGAAGACATGGTATTTAACGAGCATCAGATGGCTAAGGTGCGAAAGACTGAAGCATTCACTGCAGAAAGAGAGAGAGAGATCCAACAAGTAGTAGAATCCGTGAACGAGCTTGCTCAGATCATGAAGGACCTATCAGTACTTGTCATAGACCAGGGTACCATTATCGATAGAATAGATTACAATATCCAAAATGTTGCGACAACAGTCGAGGAGGGCCTTAAGCAACTGCAGAAGGCGGAGAGAACACAGAAACAAGGGGGGATGGTAATGTGCGCGTCCGTGCTCATTATCATGTGCTTTGTCATAGACCTTTACACAAAAAATGGTAGTGGCGTTTCCAGGCCAATCAGAGAAATTCTTGAGCACATAGGACTCATTCCCCTGTTTGGTGTGTGCCGGGGAATGGGGAGGAGGGACTTAGCTTCTCTTGAATTACAGAGTTATGGACGGAATAGTTTGTATAGAAATTGA 1122 45.28 MASRNRTLIFRKYRDALRSVRVPTGSSPASASPSTSSGTGGPVIELVSSSLLHPNRSYAPLSTEDPGNSSKGALTVGLPPAWVDVSEEIAANVQRARVKMMELAKAHAKALMPSFGDDKEDQRLIESLTQDITNLIKKSEKGLKRFSVAGPSEDSNIRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEEGQDGIDIEMNLNGNRSRMEDDDDLEDMVFNEHQMAKVRKTEAFTAEREREIQQVVESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVATTVEEGLKQLQKAERTQKQGGMVMCASVLIIMCFVIDLYTKNGSGVSRPIREILEHIGLIPLFGVCRGMGRRDLASLELQSYGRNSLYRN 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8576170 8580175 - CmaCh05G010870.1 Cma05g01087 295205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01087 373 ProSitePatterns Syntaxin / epimorphin family signature. 240 279 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cma05g01087 373 MobiDBLite consensus disorder prediction 21 44 - -
Cma05g01087 373 Gene3D - 79 288 - -
Cma05g01087 373 CDD SNARE_syntaxin16 238 295 - -
Cma05g01087 373 SMART tSNARE_6 229 296 IPR000727 -
Cma05g01087 373 Pfam SNARE domain 270 319 IPR000727 -
Cma05g01087 373 SUPERFAMILY t-snare proteins 78 289 IPR010989 GO:0016020|GO:0016192
Cma05g01087 373 SMART SynN_4 73 188 IPR006011 GO:0016020
Cma05g01087 373 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 234 296 IPR000727 -
Cma05g01087 373 MobiDBLite consensus disorder prediction 23 44 - -
Cma05g01087 373 PANTHER SYNTAXIN-43-LIKE 1 319 - -
Cma05g01087 373 PANTHER SYNTAXIN 1 319 IPR045242 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g01087 Cma12g01045 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01087 Cma-Chr5:8576170 Cma17g01060 Cma-Chr17:7591210 1.86E-137 dispersed
Cma12g01045 Cma-Chr12:8277641 Cma05g01087 Cma-Chr5:8576170 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01087 K08489 - csv:101207998 559.681