Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma05g01087 | ATGGCGTCGAGGAATCGGACTTTAATCTTTAGGAAATACAGGGACGCGTTGAGGAGTGTGAGGGTTCCTACCGGCTCTTCGCCTGCTTCTGCATCGCCATCGACTAGCTCTGGCACTGGTGGACCGGTGATTGAATTGGTTAGCTCGTCGTTGTTGCATCCGAATCGGTCGTACGCTCCCTTAAGTACTGAGGATCCGGGTAATTCAAGTAAGGGTGCTCTTACTGTGGGTCTACCTCCGGCTTGGGTGGATGTATCCGAAGAAATAGCTGCAAATGTGCAGCGTGCACGAGTAAAGATGATGGAGTTAGCTAAAGCTCATGCAAAGGCTTTAATGCCTTCATTTGGAGATGATAAAGAAGATCAACGGTTAATTGAATCTCTCACGCAAGACATAACTAACTTAATCAAGAAATCAGAGAAGGGGCTCAAGAGATTTTCCGTAGCTGGACCTTCAGAAGATTCCAATATCAGAAAAAATGTTCAGCGATCTCTTGCCACTGACCTTCAGAACCTCTCTATGGAGCTTCGCAAGAAACAGTCAACTTATTTAAAGCGCCTACGGCAGCAAAAAGAGGAAGGTCAAGATGGGATTGACATAGAGATGAATCTAAATGGAAATAGGTCGAGAATGGAGGATGACGATGATTTAGAAGACATGGTATTTAACGAGCATCAGATGGCTAAGGTGCGAAAGACTGAAGCATTCACTGCAGAAAGAGAGAGAGAGATCCAACAAGTAGTAGAATCCGTGAACGAGCTTGCTCAGATCATGAAGGACCTATCAGTACTTGTCATAGACCAGGGTACCATTATCGATAGAATAGATTACAATATCCAAAATGTTGCGACAACAGTCGAGGAGGGCCTTAAGCAACTGCAGAAGGCGGAGAGAACACAGAAACAAGGGGGGATGGTAATGTGCGCGTCCGTGCTCATTATCATGTGCTTTGTCATAGACCTTTACACAAAAAATGGTAGTGGCGTTTCCAGGCCAATCAGAGAAATTCTTGAGCACATAGGACTCATTCCCCTGTTTGGTGTGTGCCGGGGAATGGGGAGGAGGGACTTAGCTTCTCTTGAATTACAGAGTTATGGACGGAATAGTTTGTATAGAAATTGA | 1122 | 45.28 | MASRNRTLIFRKYRDALRSVRVPTGSSPASASPSTSSGTGGPVIELVSSSLLHPNRSYAPLSTEDPGNSSKGALTVGLPPAWVDVSEEIAANVQRARVKMMELAKAHAKALMPSFGDDKEDQRLIESLTQDITNLIKKSEKGLKRFSVAGPSEDSNIRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEEGQDGIDIEMNLNGNRSRMEDDDDLEDMVFNEHQMAKVRKTEAFTAEREREIQQVVESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVATTVEEGLKQLQKAERTQKQGGMVMCASVLIIMCFVIDLYTKNGSGVSRPIREILEHIGLIPLFGVCRGMGRRDLASLELQSYGRNSLYRN | 373 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 8576170 | 8580175 | - | CmaCh05G010870.1 | Cma05g01087 | 295205 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma05g01087 | 373 | ProSitePatterns | Syntaxin / epimorphin family signature. | 240 | 279 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Cma05g01087 | 373 | MobiDBLite | consensus disorder prediction | 21 | 44 | - | - | |
Cma05g01087 | 373 | Gene3D | - | 79 | 288 | - | - | |
Cma05g01087 | 373 | CDD | SNARE_syntaxin16 | 238 | 295 | - | - | |
Cma05g01087 | 373 | SMART | tSNARE_6 | 229 | 296 | IPR000727 | - | |
Cma05g01087 | 373 | Pfam | SNARE domain | 270 | 319 | IPR000727 | - | |
Cma05g01087 | 373 | SUPERFAMILY | t-snare proteins | 78 | 289 | IPR010989 | GO:0016020|GO:0016192 | |
Cma05g01087 | 373 | SMART | SynN_4 | 73 | 188 | IPR006011 | GO:0016020 | |
Cma05g01087 | 373 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 234 | 296 | IPR000727 | - | |
Cma05g01087 | 373 | MobiDBLite | consensus disorder prediction | 23 | 44 | - | - | |
Cma05g01087 | 373 | PANTHER | SYNTAXIN-43-LIKE | 1 | 319 | - | - | |
Cma05g01087 | 373 | PANTHER | SYNTAXIN | 1 | 319 | IPR045242 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma05g01087 | Cma12g01045 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g01087 | Cma-Chr5:8576170 | Cma17g01060 | Cma-Chr17:7591210 | 1.86E-137 | dispersed | |
Cma12g01045 | Cma-Chr12:8277641 | Cma05g01087 | Cma-Chr5:8576170 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma05g01087 | K08489 | - | csv:101207998 | 559.681 |