Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01093 ATGTCGACGGAGAGATTGATTTCCAGTGGTACAACTCCGTCGGAAGCAGAGCCGCCGAGGTTGGCTTCATCGTCGCATTCGTTCCGGCAATGTGGAGAATCAGCTAGGGTTTTTGAGGAGCTGCCGATTGCTTCCATTGTATCGGTTTCGCGGCCGGATACTGGAGATATTAGTCCCTTGCTGTTGTCTTACACTATTGAAATTCAATACAAACAGTTTATATGGAGCTTAGTGAAGAAAGCCTCGCAAGTTCTATATTTACATTTTGCGCTGAAGAGACGTGCATTTATTGAAGAACTTCACGAGAAACAAGAACAGGTTAAAGAATGGCTTCACAACTTGGGAATAGTAGACCATACAGCTGCAGTCCATCATGATGACGAGTCTGATGATGGGTTATTTCCTTTGCATGATGAACAAACAACAAAAAACAGGAATGTTCCTTCTGTTGCTGCTTTACCCATCATTAAGCCAGCAATGGGAGGACAGCGGTCCATTTCAGACAAGGCAAAGCTAGCAATGCAGGGTTACTTAAATCACTTCTTTGGGAACTTGGATATTGTAAATACTCGTGAGGTGTGCAAGTTTTTAGAAGTCTCGAAGATGTCATTTGTAAGAGAACACGGTCCGAAGTTGAAAGAAGGTTACCTAATGGTGAAGCATTTGAAACAGCTAACAGGATCTGATTCTAGTATAAAATGTTTTGCATGTCATTGGTGCAGTTGCTGCGTGTACAATTGGAAAAAGGTTTGGGCTGTTTTGAAACCAGGTTTCTTGGCCTTGGTTGCTGATCCCATGGACACTAAACTCCTAGATATAATTGTTTTTGATGTTCTACCAACATTAGAAGAAAAGGAGGGATCCCAAGCATGCTTAGCATATCATGTCAAGGAGCGCAATCCTTTACGTTATTCATTTAAGGTTAGAGGCGGAAATGGAAATATGAGGTTCAGAACCACAAGTACCGCCAAAGTCAAAAAATGGGTCTCAGCAATTAATGATGCTGGTTTTGGATCCAAAGATGGCTGGTGCCACCCTCATCGCTTTGGTTCTTTTGCTCCTCAGAGAGGTTTGAGTGATGATGAAAGCCAAGCTCAATGGTTCATAGATGGCCGGGCAGCTTTTGAAGCAATCGCTTGTTCTATTGAGGCTGCAAAATCTGAGATATTCATCACTGGTTGGTGGCTTTGCCCTGAGCTTTATTTGCGACGTCCTTTTCACAATCATTCTTCTTCACGGCTTGATGCATTGCTTGAAACAAAGGCAAAAGAAGGTGTCAAGATTTACATCTTAATGTATAAAGAGGTCCCTATTGCTCTGAAAATTAACAGTAGGTATAGTAAGAAGAGGCTTCTAAATATTCATGAGAATATTAAGGTACTACGTTCTCCTGATCATATGTCAACTGGGATTTACTATTGGTCACATCATGAAAAACTTGTCATCGTTGATCACCACATTTGCTTCATTGGAGGTTTGGATTTGTGCTTTGGCCGCTATGATACAATGGAACATAAAGTGAGTGATTTCCCACCTTATACATGGCCAGGAAAGGACTATTACAACCCCAGAGAATCTGAACCAAATTCTTGGGAAGACACAATGAGTGATGAATTGGAGCGGGAGAAGTGTCCTCGAATGCCATGGCATGATGTTCACTGTGCTCTTTGGGGATCTCCATGCCGTGATATTGCTCGTCACTTTGTTCAGAGGTGGAACCATGCCAAGAGAGATAAAGCCCCAAATGAAGAAAAAATACCTCTATTAATGCCTCAACATGACATGGTCCTTCCACATTACATGGGAAGAAGCACGGAGTTGAGTTTCAAAAATAAAGGCTCAGAGCAAGATCATCAAAAGCAGAACACGGAAGATTTCTTTTTCTCCTCATCACCACAGGAAGATATACCATTACTTATGCCTCAGGAAGTTGGTGGACTTCCAGTTTCTAACATGGAAAGAAATAGTCAAATGAACAAACAAATGGAGATACAAAGTAGTGCTATGGATTCTTTCCAGGCATACAATGTTGAATCATTGACCCAATATGAACAAGCAAATGGATTGTTCGATGAATTTGGATTTTTGGATGAGTTTGGTGATTTTGGTCTTTCGAGGGAAGCTACTACTGATACTCCGACATATATGAAAACTTCAGATGATTGGTTGGAAACCGAACATGAAAGCAATCATGTTGTTGCTGTAAACGAGGTCAAAGAAATCGGTCCTCTTACTACCACCAATTGTCAGGTAATAAGAAGTGTCAGCCAGTGGTCAGCAGGAACAAGCAAACCAGAAGCAAGCATCCATGCTGCTTATTGTTCTGCCATTCAAGAGGCAAAACACTTCATCTACATTGAGAACCAGTTTTTCATATCAGGTTTATCAGGGGATGAGACCATCCACAATCGGGTTCTGGAAACACTATACCAACGTATATGGCTGGCTCATAAAGAAAAACAATGTTTTAGAGTTATTATTGTTTTACCACTCTTACCTGGATTTCAGGGTGGTGTAGATGATAATGGTGCTGCAACTGTTCGAGCCTTGATGCATTGGCAGTATCGAACAATTAGTTGGGAAAAAACTTCGATATTGTACCGTCTCAATCTTTTACTGGGTTCTAAAACACAGGATTATATCTTGTTTTGTGGCCTCCGATCATATGGCAGACTTTTTGATGGTGGTCCAATTGCCACTAGTCAGGTGTATGTGCACAGCAAATTGATGATAATCGATGATTGCATTACCTTTATTGGTTCCTCCAACATTAACGATAGAAGTTTACTTGGATCCAGAGATTCTGAGATTGGGGTGATTATTGAGGATAAAGAGTTTGTTGATTCATGTATGAATGGAAAGCCATGGAAGGCAGGAAAATTCGCTCATAGTCTACGATGCTCCTTGTGGTGTGAGCACCTTGGTCTTCATCTCGGAGAGGTCAGTCAAATCCTTGATCCTATAGTAGAAGCAACGTACAAAGATTTATGGATAGCTACGGCAAAGGAAAACACAGCAATATATGAAGATGTCTTTTCTTGCATCCCCAACGACAACATAAACTCAAGATCATCTTTACGCCAAAGTTTGGCCGATTTGAAGTGCAAACTTGATCATAACACACTAGATTTAGGAATAGCTGCTGAGAAGATAGAAAACCATGCAAATGGGGAAGTAAAGATGATAGATCCAATGGAGAAACTGAAGTGTATTAGAGGACATCTTGTCTGTTTTCCATTGAAGTTCTTGTGGCAAGAAGATCTCAGACCAGGCTTCATTGAGAGTGAGTTTTATGCTGCCCCTCAAGTTTTTCATTGA 3318 41.08 MSTERLISSGTTPSEAEPPRLASSSHSFRQCGESARVFEELPIASIVSVSRPDTGDISPLLLSYTIEIQYKQFIWSLVKKASQVLYLHFALKRRAFIEELHEKQEQVKEWLHNLGIVDHTAAVHHDDESDDGLFPLHDEQTTKNRNVPSVAALPIIKPAMGGQRSISDKAKLAMQGYLNHFFGNLDIVNTREVCKFLEVSKMSFVREHGPKLKEGYLMVKHLKQLTGSDSSIKCFACHWCSCCVYNWKKVWAVLKPGFLALVADPMDTKLLDIIVFDVLPTLEEKEGSQACLAYHVKERNPLRYSFKVRGGNGNMRFRTTSTAKVKKWVSAINDAGFGSKDGWCHPHRFGSFAPQRGLSDDESQAQWFIDGRAAFEAIACSIEAAKSEIFITGWWLCPELYLRRPFHNHSSSRLDALLETKAKEGVKIYILMYKEVPIALKINSRYSKKRLLNIHENIKVLRSPDHMSTGIYYWSHHEKLVIVDHHICFIGGLDLCFGRYDTMEHKVSDFPPYTWPGKDYYNPRESEPNSWEDTMSDELEREKCPRMPWHDVHCALWGSPCRDIARHFVQRWNHAKRDKAPNEEKIPLLMPQHDMVLPHYMGRSTELSFKNKGSEQDHQKQNTEDFFFSSSPQEDIPLLMPQEVGGLPVSNMERNSQMNKQMEIQSSAMDSFQAYNVESLTQYEQANGLFDEFGFLDEFGDFGLSREATTDTPTYMKTSDDWLETEHESNHVVAVNEVKEIGPLTTTNCQVIRSVSQWSAGTSKPEASIHAAYCSAIQEAKHFIYIENQFFISGLSGDETIHNRVLETLYQRIWLAHKEKQCFRVIIVLPLLPGFQGGVDDNGAATVRALMHWQYRTISWEKTSILYRLNLLLGSKTQDYILFCGLRSYGRLFDGGPIATSQVYVHSKLMIIDDCITFIGSSNINDRSLLGSRDSEIGVIIEDKEFVDSCMNGKPWKAGKFAHSLRCSLWCEHLGLHLGEVSQILDPIVEATYKDLWIATAKENTAIYEDVFSCIPNDNINSRSSLRQSLADLKCKLDHNTLDLGIAAEKIENHANGEVKMIDPMEKLKCIRGHLVCFPLKFLWQEDLRPGFIESEFYAAPQVFH 1105
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8617989 8627814 - CmaCh05G010930.1 Cma05g01093 295211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01093 1105 SUPERFAMILY Phospholipase D/nuclease 742 949 - -
Cma05g01093 1105 Pfam PLD-like domain 775 949 IPR025202 -
Cma05g01093 1105 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 901 928 IPR001736 GO:0003824
Cma05g01093 1105 MobiDBLite consensus disorder prediction 1 25 - -
Cma05g01093 1105 CDD PLDc_vPLD1_2_yPLD_like_1 365 509 - -
Cma05g01093 1105 Gene3D Endonuclease Chain A 357 599 - -
Cma05g01093 1105 PANTHER PHOSPHOLIPASE D 26 1102 IPR015679 -
Cma05g01093 1105 ProSiteProfiles PH domain profile. 210 337 IPR001849 -
Cma05g01093 1105 CDD PH_PLD 188 335 - -
Cma05g01093 1105 Gene3D Endonuclease Chain A 712 962 - -
Cma05g01093 1105 SUPERFAMILY PH domain-like 208 338 - -
Cma05g01093 1105 SUPERFAMILY Phospholipase D/nuclease 339 592 - -
Cma05g01093 1105 SMART pld_4 901 928 IPR001736 GO:0003824
Cma05g01093 1105 SMART pld_4 472 499 IPR001736 GO:0003824
Cma05g01093 1105 SMART PH_update 211 339 IPR001849 -
Cma05g01093 1105 Gene3D - 200 337 IPR011993 -
Cma05g01093 1105 PANTHER PHOSPHOLIPASE D ZETA 2 26 1102 - -
Cma05g01093 1105 Pfam Phospholipase D Active site motif 474 499 IPR001736 GO:0003824
Cma05g01093 1105 PIRSF PLD_euk 704 1105 IPR016555 GO:0004630|GO:0006654|GO:0048017
Cma05g01093 1105 PIRSF PLD_euk 53 626 IPR016555 GO:0004630|GO:0006654|GO:0048017
Cma05g01093 1105 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 472 499 IPR001736 GO:0003824
Cma05g01093 1105 CDD PLDc_vPLD1_2_yPLD_like_2 761 945 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01093 Cma-Chr5:8617989 Cma08g01245 Cma-Chr8:7606619 0 dispersed
Cma17g00346 Cma-Chr17:1870475 Cma05g01093 Cma-Chr5:8617989 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01093 K01115 - csv:101220522 2070.05