Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma05g01114 | ATGGCGCAGTCCCCCTTCTCTCTCCTCGTCCTCAAGCGTCTTTCCTGCTCTTCTCGATTCTCCAATGCACCTCTTTCTTCGCCCCTCCTTTCTCATTTCCTCACTATCGGATCATCCAAGCGATTTTTCACCTCCGAAGTCTCGTCAACCCCCTCCTCACCTTCTTCCAATCCCAAACCCAATTCCCTTTCAGCCCGAATGAGCTTCATCTTCGATCAAATCGACGCCATTGAAAAAGAGCGCTCTCAGAAGGACCAAACTCTGCAGAGAATTCGAGCCTGGCGTGAGTCGAAGGCCAACCAGAATCCGCCCGTCGAGGATGGGCGACCGGAATCGACGTTAGGGAGTGGTAATCTTGGGGATAATGTTAATAATTCGGAGTCTGCTTTGAGAATGGACGAAGCAAATGAGATGGAAAGGACGGAGAAGCAGAGAAAAGAAATTGAATTGGTGCATCCATGGCCGGAGTGGATCGAGTTGATGGAAAGGTTAGTTCATCAGAATTACTTTGATCACAGGAGGAAAGATGAGAACAAGATGGTCGAAGAATTGGGATTCAGGGCTTCTGACCTTGCTTTGGAGGAGGATGTAGGGTTGGATTTGTCCAAGGATTTTAAGGCAGTTTATACTGCGTGCCTGAATTTTGGGAAGGACCGGTTCGACATTCTCAGGTCGTTGTCAAGAAAAGACATCCAAATTTTGGTAGGTTTTGGGTGCCCAAGTCCAGACAAGAAGGTTGTTTTCTCTGCAAAACTCTTGAGGAAGCTCGTTCATCTTGATGAAGGAGATGTTTGCAGTTCCTGCAGTTTAAGAAATTCTTGTGAAAGAGCATATTTGGTGACTAATAAAGAAGATGAGGCTCGCACAATCGATATTATGCGACTTTTATTTACTTTTGGTTTTGATCCCATGAAAGGAACGGTTGTTAATGATTCCCTTCTGAAGCGAAAAACTGTTAAAACAGTTGTTCGCAAATTACTTCATGAGGTTGTCAAGTTGGGTTCAGTCCCAATAGATCCTACTCTCTCTCCTCCTGTAATCAAAAGGCCTCCACCAAAAGTGAAGCAGCCCCCACCTCCACCGAAGAAGCGAGTAGGACGTGATGATGTTGAGATGAAAAAAGGGGATTGGCTTTGTCCTAAGTGCGACTTCATGAACTTTGCAAAAAACACGGTGTGCCTGCAGTGTGACGCCCAACGTCCTAAACGGCAGCTGCTACCAGGCGAATGGGAATGCCCAGAATGTAACTTCTTAAATTATAGGAGAAATATGGCATGTTTCCATTGTGAATGCAAGCGGCCAACAGACACATTTTTAGATAATGAAAAGCAAGAAAGACAACACGTTCCTTCGAGGTTCGAAAAGATCGCCAATAGGCAAGAGGTCTCTAATGCTTGGAATTTCGACTTCGACGATGATGAGTCAGATGGGGCAGATGTTGCAGCTTTTGAGTATGCAGATTCATCAGTTGCAGCAGCCGAAGGATCTCATGCCGATAATCTGGCGAGAGGAAGCAAATTTAACTCCGATCTCCCGGAAAGACAGCACTCTGATGCTGGAAATAGAGGTCCAGGTGTCGGATTTGACGATTTTGTCGATGAGGAGGACGATATCGACAATTATGAGCTAGATAACTCAGTGAACAATTCAGGAAGGCAGCCTCATTCGGTTGATTTTTCTGACATTGAAGGGCACTCAGGGTCAGAAGATGGTGATGACTTTGGCCATAGATCTGGTGTCCCATCTTATAATAAGCGTCCAAGACGTCAACAAGCAGCTTTCTCTGATTCTGAGGGCGATGAACTTGATTCTGATGACGATATTTCTGCTAAGAAGAATTGGAAATCTAGTCATCTGACCAGTTCAAGACAGAAAAGTAGAGACAATGGTCAATCAAGGAGGGGATTAAGCTATGGTTCTGATGAAAACCTCGACTCCGACCTCGATGAGGATTTAAATGAAAGACCTCGATCTAGACAGAGTGAAGGAAAGGATTTCGACTCCAATAGGAAGCATTTTCAAAGGAGAGGAAGTTCTCGTATGGGTGGTCGATCATCCGAATCAGATTTTGATGATTTCGATAGAGGTATGCGTAGACAAAAATTGAAAGGGAATCAGAGGGAAAATAATCGAAGGGGAAGCGACACTCGAACTAGTGGTGATAAATACAGTAGAGGAAGTGAGTTTCAGTCTAACAATTTCAGAAATGGTAGAAAGAACACATTTGATGAAAATTTTGATGATTTTGGTGACAAGTCCCATCGGTCTCGTGGTACCAATTCAAGATTTCGTGGGAACAGTCATGGCGGGCGAGGAACATATAGTTCGCGGAGTCCTAAAGAAGGTTACAAGAAAGATCGACCAAGAAGGTATAATGAATACGATACAACAACGGATAAGGATTATGGTGACTTCAAAAACAGTCGACGTGTTATTGAAAGATAG | 2445 | 44.34 | MAQSPFSLLVLKRLSCSSRFSNAPLSSPLLSHFLTIGSSKRFFTSEVSSTPSSPSSNPKPNSLSARMSFIFDQIDAIEKERSQKDQTLQRIRAWRESKANQNPPVEDGRPESTLGSGNLGDNVNNSESALRMDEANEMERTEKQRKEIELVHPWPEWIELMERLVHQNYFDHRRKDENKMVEELGFRASDLALEEDVGLDLSKDFKAVYTACLNFGKDRFDILRSLSRKDIQILVGFGCPSPDKKVVFSAKLLRKLVHLDEGDVCSSCSLRNSCERAYLVTNKEDEARTIDIMRLLFTFGFDPMKGTVVNDSLLKRKTVKTVVRKLLHEVVKLGSVPIDPTLSPPVIKRPPPKVKQPPPPPKKRVGRDDVEMKKGDWLCPKCDFMNFAKNTVCLQCDAQRPKRQLLPGEWECPECNFLNYRRNMACFHCECKRPTDTFLDNEKQERQHVPSRFEKIANRQEVSNAWNFDFDDDESDGADVAAFEYADSSVAAAEGSHADNLARGSKFNSDLPERQHSDAGNRGPGVGFDDFVDEEDDIDNYELDNSVNNSGRQPHSVDFSDIEGHSGSEDGDDFGHRSGVPSYNKRPRRQQAAFSDSEGDELDSDDDISAKKNWKSSHLTSSRQKSRDNGQSRRGLSYGSDENLDSDLDEDLNERPRSRQSEGKDFDSNRKHFQRRGSSRMGGRSSESDFDDFDRGMRRQKLKGNQRENNRRGSDTRTSGDKYSRGSEFQSNNFRNGRKNTFDENFDDFGDKSHRSRGTNSRFRGNSHGGRGTYSSRSPKEGYKKDRPRRYNEYDTTTDKDYGDFKNSRRVIER | 814 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 8766781 | 8772182 | - | CmaCh05G011140.1 | Cma05g01114 | 295232 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma05g01114 | 814 | MobiDBLite | consensus disorder prediction | 558 | 576 | - | - | |
Cma05g01114 | 814 | MobiDBLite | consensus disorder prediction | 723 | 739 | - | - | |
Cma05g01114 | 814 | MobiDBLite | consensus disorder prediction | 614 | 639 | - | - | |
Cma05g01114 | 814 | MobiDBLite | consensus disorder prediction | 685 | 722 | - | - | |
Cma05g01114 | 814 | MobiDBLite | consensus disorder prediction | 94 | 126 | - | - | |
Cma05g01114 | 814 | SUPERFAMILY | Ran binding protein zinc finger-like | 366 | 402 | IPR036443 | - | |
Cma05g01114 | 814 | ProSitePatterns | Zinc finger RanBP2-type signature. | 377 | 396 | IPR001876 | - | |
Cma05g01114 | 814 | SMART | zf_4 | 408 | 432 | IPR001876 | - | |
Cma05g01114 | 814 | SMART | zf_4 | 375 | 399 | IPR001876 | - | |
Cma05g01114 | 814 | ProSitePatterns | Zinc finger RanBP2-type signature. | 410 | 429 | IPR001876 | - | |
Cma05g01114 | 814 | MobiDBLite | consensus disorder prediction | 760 | 774 | - | - | |
Cma05g01114 | 814 | PANTHER | ZINC FINGER PROTEIN | 3 | 692 | - | - | |
Cma05g01114 | 814 | PANTHER | ZINC FINGER (RAN-BINDING) FAMILY PROTEIN | 3 | 692 | - | - | |
Cma05g01114 | 814 | Coils | Coil | 131 | 151 | - | - | |
Cma05g01114 | 814 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 373 | 402 | IPR001876 | - | |
Cma05g01114 | 814 | Pfam | Zn-finger in Ran binding protein and others | 373 | 401 | IPR001876 | - | |
Cma05g01114 | 814 | Pfam | Zn-finger in Ran binding protein and others | 407 | 434 | IPR001876 | - | |
Cma05g01114 | 814 | MobiDBLite | consensus disorder prediction | 343 | 359 | - | - | |
Cma05g01114 | 814 | MobiDBLite | consensus disorder prediction | 494 | 814 | - | - | |
Cma05g01114 | 814 | MobiDBLite | consensus disorder prediction | 650 | 674 | - | - | |
Cma05g01114 | 814 | MobiDBLite | consensus disorder prediction | 740 | 758 | - | - | |
Cma05g01114 | 814 | MobiDBLite | consensus disorder prediction | 342 | 369 | - | - | |
Cma05g01114 | 814 | Gene3D | - | 404 | 437 | - | - | |
Cma05g01114 | 814 | Gene3D | - | 365 | 403 | - | - | |
Cma05g01114 | 814 | MobiDBLite | consensus disorder prediction | 778 | 814 | - | - | |
Cma05g01114 | 814 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 406 | 435 | IPR001876 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma05g01114 | Cma10g01113 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g01842 | Cma-Chr4:9281138 | Cma05g01114 | Cma-Chr5:8766781 | 6.04E-06 | dispersed | |
Cma05g01114 | Cma-Chr5:8766781 | Cma10g00332 | Cma-Chr10:1528782 | 2.62E-54 | dispersed | |
Cma18g00689 | Cma-Chr18:6327746 | Cma05g01114 | Cma-Chr5:8766781 | 9.99E-06 | dispersed | |
Cma05g01114 | Cma-Chr5:8766781 | Cma11g00317 | Cma-Chr11:1577574 | 3.40E-68 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma05g01114 | - | K02350 | bhj:120079783 | 1271.91 |