Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01114 ATGGCGCAGTCCCCCTTCTCTCTCCTCGTCCTCAAGCGTCTTTCCTGCTCTTCTCGATTCTCCAATGCACCTCTTTCTTCGCCCCTCCTTTCTCATTTCCTCACTATCGGATCATCCAAGCGATTTTTCACCTCCGAAGTCTCGTCAACCCCCTCCTCACCTTCTTCCAATCCCAAACCCAATTCCCTTTCAGCCCGAATGAGCTTCATCTTCGATCAAATCGACGCCATTGAAAAAGAGCGCTCTCAGAAGGACCAAACTCTGCAGAGAATTCGAGCCTGGCGTGAGTCGAAGGCCAACCAGAATCCGCCCGTCGAGGATGGGCGACCGGAATCGACGTTAGGGAGTGGTAATCTTGGGGATAATGTTAATAATTCGGAGTCTGCTTTGAGAATGGACGAAGCAAATGAGATGGAAAGGACGGAGAAGCAGAGAAAAGAAATTGAATTGGTGCATCCATGGCCGGAGTGGATCGAGTTGATGGAAAGGTTAGTTCATCAGAATTACTTTGATCACAGGAGGAAAGATGAGAACAAGATGGTCGAAGAATTGGGATTCAGGGCTTCTGACCTTGCTTTGGAGGAGGATGTAGGGTTGGATTTGTCCAAGGATTTTAAGGCAGTTTATACTGCGTGCCTGAATTTTGGGAAGGACCGGTTCGACATTCTCAGGTCGTTGTCAAGAAAAGACATCCAAATTTTGGTAGGTTTTGGGTGCCCAAGTCCAGACAAGAAGGTTGTTTTCTCTGCAAAACTCTTGAGGAAGCTCGTTCATCTTGATGAAGGAGATGTTTGCAGTTCCTGCAGTTTAAGAAATTCTTGTGAAAGAGCATATTTGGTGACTAATAAAGAAGATGAGGCTCGCACAATCGATATTATGCGACTTTTATTTACTTTTGGTTTTGATCCCATGAAAGGAACGGTTGTTAATGATTCCCTTCTGAAGCGAAAAACTGTTAAAACAGTTGTTCGCAAATTACTTCATGAGGTTGTCAAGTTGGGTTCAGTCCCAATAGATCCTACTCTCTCTCCTCCTGTAATCAAAAGGCCTCCACCAAAAGTGAAGCAGCCCCCACCTCCACCGAAGAAGCGAGTAGGACGTGATGATGTTGAGATGAAAAAAGGGGATTGGCTTTGTCCTAAGTGCGACTTCATGAACTTTGCAAAAAACACGGTGTGCCTGCAGTGTGACGCCCAACGTCCTAAACGGCAGCTGCTACCAGGCGAATGGGAATGCCCAGAATGTAACTTCTTAAATTATAGGAGAAATATGGCATGTTTCCATTGTGAATGCAAGCGGCCAACAGACACATTTTTAGATAATGAAAAGCAAGAAAGACAACACGTTCCTTCGAGGTTCGAAAAGATCGCCAATAGGCAAGAGGTCTCTAATGCTTGGAATTTCGACTTCGACGATGATGAGTCAGATGGGGCAGATGTTGCAGCTTTTGAGTATGCAGATTCATCAGTTGCAGCAGCCGAAGGATCTCATGCCGATAATCTGGCGAGAGGAAGCAAATTTAACTCCGATCTCCCGGAAAGACAGCACTCTGATGCTGGAAATAGAGGTCCAGGTGTCGGATTTGACGATTTTGTCGATGAGGAGGACGATATCGACAATTATGAGCTAGATAACTCAGTGAACAATTCAGGAAGGCAGCCTCATTCGGTTGATTTTTCTGACATTGAAGGGCACTCAGGGTCAGAAGATGGTGATGACTTTGGCCATAGATCTGGTGTCCCATCTTATAATAAGCGTCCAAGACGTCAACAAGCAGCTTTCTCTGATTCTGAGGGCGATGAACTTGATTCTGATGACGATATTTCTGCTAAGAAGAATTGGAAATCTAGTCATCTGACCAGTTCAAGACAGAAAAGTAGAGACAATGGTCAATCAAGGAGGGGATTAAGCTATGGTTCTGATGAAAACCTCGACTCCGACCTCGATGAGGATTTAAATGAAAGACCTCGATCTAGACAGAGTGAAGGAAAGGATTTCGACTCCAATAGGAAGCATTTTCAAAGGAGAGGAAGTTCTCGTATGGGTGGTCGATCATCCGAATCAGATTTTGATGATTTCGATAGAGGTATGCGTAGACAAAAATTGAAAGGGAATCAGAGGGAAAATAATCGAAGGGGAAGCGACACTCGAACTAGTGGTGATAAATACAGTAGAGGAAGTGAGTTTCAGTCTAACAATTTCAGAAATGGTAGAAAGAACACATTTGATGAAAATTTTGATGATTTTGGTGACAAGTCCCATCGGTCTCGTGGTACCAATTCAAGATTTCGTGGGAACAGTCATGGCGGGCGAGGAACATATAGTTCGCGGAGTCCTAAAGAAGGTTACAAGAAAGATCGACCAAGAAGGTATAATGAATACGATACAACAACGGATAAGGATTATGGTGACTTCAAAAACAGTCGACGTGTTATTGAAAGATAG 2445 44.34 MAQSPFSLLVLKRLSCSSRFSNAPLSSPLLSHFLTIGSSKRFFTSEVSSTPSSPSSNPKPNSLSARMSFIFDQIDAIEKERSQKDQTLQRIRAWRESKANQNPPVEDGRPESTLGSGNLGDNVNNSESALRMDEANEMERTEKQRKEIELVHPWPEWIELMERLVHQNYFDHRRKDENKMVEELGFRASDLALEEDVGLDLSKDFKAVYTACLNFGKDRFDILRSLSRKDIQILVGFGCPSPDKKVVFSAKLLRKLVHLDEGDVCSSCSLRNSCERAYLVTNKEDEARTIDIMRLLFTFGFDPMKGTVVNDSLLKRKTVKTVVRKLLHEVVKLGSVPIDPTLSPPVIKRPPPKVKQPPPPPKKRVGRDDVEMKKGDWLCPKCDFMNFAKNTVCLQCDAQRPKRQLLPGEWECPECNFLNYRRNMACFHCECKRPTDTFLDNEKQERQHVPSRFEKIANRQEVSNAWNFDFDDDESDGADVAAFEYADSSVAAAEGSHADNLARGSKFNSDLPERQHSDAGNRGPGVGFDDFVDEEDDIDNYELDNSVNNSGRQPHSVDFSDIEGHSGSEDGDDFGHRSGVPSYNKRPRRQQAAFSDSEGDELDSDDDISAKKNWKSSHLTSSRQKSRDNGQSRRGLSYGSDENLDSDLDEDLNERPRSRQSEGKDFDSNRKHFQRRGSSRMGGRSSESDFDDFDRGMRRQKLKGNQRENNRRGSDTRTSGDKYSRGSEFQSNNFRNGRKNTFDENFDDFGDKSHRSRGTNSRFRGNSHGGRGTYSSRSPKEGYKKDRPRRYNEYDTTTDKDYGDFKNSRRVIER 814
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 8766781 8772182 - CmaCh05G011140.1 Cma05g01114 295232
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01114 814 MobiDBLite consensus disorder prediction 558 576 - -
Cma05g01114 814 MobiDBLite consensus disorder prediction 723 739 - -
Cma05g01114 814 MobiDBLite consensus disorder prediction 614 639 - -
Cma05g01114 814 MobiDBLite consensus disorder prediction 685 722 - -
Cma05g01114 814 MobiDBLite consensus disorder prediction 94 126 - -
Cma05g01114 814 SUPERFAMILY Ran binding protein zinc finger-like 366 402 IPR036443 -
Cma05g01114 814 ProSitePatterns Zinc finger RanBP2-type signature. 377 396 IPR001876 -
Cma05g01114 814 SMART zf_4 408 432 IPR001876 -
Cma05g01114 814 SMART zf_4 375 399 IPR001876 -
Cma05g01114 814 ProSitePatterns Zinc finger RanBP2-type signature. 410 429 IPR001876 -
Cma05g01114 814 MobiDBLite consensus disorder prediction 760 774 - -
Cma05g01114 814 PANTHER ZINC FINGER PROTEIN 3 692 - -
Cma05g01114 814 PANTHER ZINC FINGER (RAN-BINDING) FAMILY PROTEIN 3 692 - -
Cma05g01114 814 Coils Coil 131 151 - -
Cma05g01114 814 ProSiteProfiles Zinc finger RanBP2 type profile. 373 402 IPR001876 -
Cma05g01114 814 Pfam Zn-finger in Ran binding protein and others 373 401 IPR001876 -
Cma05g01114 814 Pfam Zn-finger in Ran binding protein and others 407 434 IPR001876 -
Cma05g01114 814 MobiDBLite consensus disorder prediction 343 359 - -
Cma05g01114 814 MobiDBLite consensus disorder prediction 494 814 - -
Cma05g01114 814 MobiDBLite consensus disorder prediction 650 674 - -
Cma05g01114 814 MobiDBLite consensus disorder prediction 740 758 - -
Cma05g01114 814 MobiDBLite consensus disorder prediction 342 369 - -
Cma05g01114 814 Gene3D - 404 437 - -
Cma05g01114 814 Gene3D - 365 403 - -
Cma05g01114 814 MobiDBLite consensus disorder prediction 778 814 - -
Cma05g01114 814 ProSiteProfiles Zinc finger RanBP2 type profile. 406 435 IPR001876 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cma05g01114 Cma10g01113 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01842 Cma-Chr4:9281138 Cma05g01114 Cma-Chr5:8766781 6.04E-06 dispersed
Cma05g01114 Cma-Chr5:8766781 Cma10g00332 Cma-Chr10:1528782 2.62E-54 dispersed
Cma18g00689 Cma-Chr18:6327746 Cma05g01114 Cma-Chr5:8766781 9.99E-06 dispersed
Cma05g01114 Cma-Chr5:8766781 Cma11g00317 Cma-Chr11:1577574 3.40E-68 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01114 - K02350 bhj:120079783 1271.91