Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01139 ATGCAAGATATCTTCGCTTCTGTTCGCCGATCATTGGTGTTTCGCGCTCCTCTTGAGAATGAGGATCCTCATTCCCCTGCAATTGGAGTTGGAGCCCTAGTTGATAAGATTAACTCCAGCATTCGGAAATCCAGAGTGTTTTCTAGGCACTCCCCGTCGTCCTCGGCTCTTCCTCCCATCCCCAAGGAAACTGACCCTCCGATTCGATGGCGCAAGGGCGAGTTGATTGGCTGCGGCGCCTTTGGCCGGGTGTATATGGGTATGAATCTTGGCTCTGGAGAGCTTCTCGCTGTCAAGCAGGTTCTGATTGCTGCAAATGGCGCTTCGAAGGAGAAAGCGCAGACTCACGTTAAGGAGCTTGAGGAAGAAGTGAAACTTCTCAAGGATCTTTCTCATCAAAATATTGTTAGATACTTGGGGACAGTCAGAGAGGATGATTCTTTAAATATATTATTGGAATTTGTCCCTGGTGGATCAATATCGTCACTTTTGGGGAAATTTGGAGCCTTTCCTGAAGCAGTTTTAAGAACATATACAAAACAGTTATTATTGGGATTGGAATATTTACACAAGAACGGTATCATGCACAGGGACATTAAGGGGGCGAATATCCTTGTAGATAACAATGGATGCATTAAGCTTGCTGATTTTGGGGCATCAAAACAAGTTGTCGAGCTGGCTACAATTTCAGGAGCAAAGTCTATGAAGGGCACTCCATATTGGATGGCTCCTGAAGTAATTCTGCAGACTGGGCATAATTTCTCTGCTGACATATGGAGTGTTGGATGCACTGTTATTGAGATGGCTACAGGAAAGCCTCCTTGGAGCCAACAGTATCAAGAGGTTGCTGCTCTTTTTCATATAGGCACAACGAAGTCTCATCCACCAATCCCTGAGCAGCTTTCAGTTGAAGCTAAAGATTTTCTGTTGAAATGTTTGCAAAAGGAACCAAACTTAAGACCAGCTGCCTCTGAACTCTTGAAGCATCCGTTTGTTACTGGGGAGGAGGTAGAATCTCAAATTGTGTCACGTGATGCATGCACGGAGCCCTTGGAAATCCATTCACCTTTGTATACTTCAAATTTTGAAATGAGTAAAACTCCAACACATCCTGGATCAAGTGATATTTGTAATTTGGATAGCCTGAGCTGCTCAAAGGTATACACTGCAAACAAACTAGAAAGCGGTATATGGGCAGCAAACAGTGATGATGAAATGTGTCAGATTGATGACAAGGATGATTTAATGTTAGATGAAGTAAAAATCGGCTCTTCTATTGTACATGAGAATTTGAAGAGTTATAACCCAATTTGTGAGCCCTCCGATGATGAGGATTGCAAATTTGATAGAAGTCCAGCGGTAGACCAAGGAAGCAATTTAGAAGAGGAAGCTCTTGCAGCTAGAAGCTGTTCAGGAGTTTTTGACGAGGACCAGAACTTCTCATTTCCTAGGGGACGATCACTCTCTGAAGACGAGGATGAGCTTACTGAATCAAAAATTAAAGCTTTCTTGTATGAAAAGGCTCTTGAATTGAAGAAACTGCAGTCACCGCTTTATGAGGAATTCTACAATAGTTTGAATGCATCCTGCTCTCCAGTTTTTATTGAGAGTAAACGAGATGAAAGTACTCCCACATACTTGAAATTGCCTCCGAAAAGCCGGTCACCAAGTCGAAGTCCTGGTAATCCATCCCCAGCAATTGATGCTTTTGGCACTGGTAGCCCAGCTAGTGGTAGCAGCAGGGGTAATGCAAATGATCAAAGATCACAACTCAGCGATTGGAAAGGACTTCTAGTTGAGGGTCAGTCAGAAGCTGGTAGCCCGAGCAAGCATTATTCTGATATACAAAGGAAGTGGAAAGAAGAGCTTGATCAAGAGCTTGAGAAAAAACGAGAGATGATGCGTCAAGCTGGTGGGGGAGGCAAAACTTCATCACCAAAGGATAAAGCCATGGGCCGACAGAGAGAGCGGACAAGATTTGCATCTCCATTACGAGATGATGCATCGGGCGCTGGAAGGGAGAACAGGGAAAACATCATCTCCTGA 2046 44.09 MQDIFASVRRSLVFRAPLENEDPHSPAIGVGALVDKINSSIRKSRVFSRHSPSSSALPPIPKETDPPIRWRKGELIGCGAFGRVYMGMNLGSGELLAVKQVLIAANGASKEKAQTHVKELEEEVKLLKDLSHQNIVRYLGTVREDDSLNILLEFVPGGSISSLLGKFGAFPEAVLRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNNGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHNFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGTTKSHPPIPEQLSVEAKDFLLKCLQKEPNLRPAASELLKHPFVTGEEVESQIVSRDACTEPLEIHSPLYTSNFEMSKTPTHPGSSDICNLDSLSCSKVYTANKLESGIWAANSDDEMCQIDDKDDLMLDEVKIGSSIVHENLKSYNPICEPSDDEDCKFDRSPAVDQGSNLEEEALAARSCSGVFDEDQNFSFPRGRSLSEDEDELTESKIKAFLYEKALELKKLQSPLYEEFYNSLNASCSPVFIESKRDESTPTYLKLPPKSRSPSRSPGNPSPAIDAFGTGSPASGSSRGNANDQRSQLSDWKGLLVEGQSEAGSPSKHYSDIQRKWKEELDQELEKKREMMRQAGGGGKTSSPKDKAMGRQRERTRFASPLRDDASGAGRENRENIIS 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8891905 8896565 - CmaCh05G011390.1 Cma05g01139 295257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01139 681 SUPERFAMILY Protein kinase-like (PK-like) 69 374 IPR011009 -
Cma05g01139 681 Gene3D Transferase(Phosphotransferase) domain 1 69 358 - -
Cma05g01139 681 MobiDBLite consensus disorder prediction 611 636 - -
Cma05g01139 681 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE ISOFORM X1 1 617 - -
Cma05g01139 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Cma05g01139 681 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Cma05g01139 681 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 617 - -
Cma05g01139 681 MobiDBLite consensus disorder prediction 648 681 - -
Cma05g01139 681 MobiDBLite consensus disorder prediction 573 592 - -
Cma05g01139 681 MobiDBLite consensus disorder prediction 541 681 - -
Cma05g01139 681 ProSiteProfiles Protein kinase domain profile. 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g01139 681 Pfam Protein kinase domain 71 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g01139 681 Coils Coil 616 636 - -
Cma05g01139 681 Coils Coil 110 130 - -
Cma05g01139 681 CDD STKc_MAPKKK 69 332 - -
Cma05g01139 681 SMART serkin_6 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01139 Cma-Chr5:8891905 Cma17g00258 Cma-Chr17:1332965 0 dispersed
Cma07g00381 Cma-Chr7:1632830 Cma05g01139 Cma-Chr5:8891905 1.53E-21 transposed
Cma03g01061 Cma-Chr3:7314253 Cma05g01139 Cma-Chr5:8891905 1.54E-19 transposed
Cma12g01073 Cma-Chr12:8486090 Cma05g01139 Cma-Chr5:8891905 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68593 PF00069 Pkinase 1.10E-70 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01139 K20606 - csv:101209358 1187.94