Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01154 ATGGCATTAGAAGCTGTGGTTTTTTCTCAAGATCTTTACACCTCGTTTGGTGGAGGGATTTGGACAAATGGGAGCTTTCAATTTCCTCAAATCCCTCATGATTTTCCCGAGAAACAAACAGAAAATTTCCCTTTTGAAGATTGGAACTCATCCTCCTCTGTTTTTCTTCCTATTCCTTCCCCTGAAGAACCTGCCATTTCCAGAAATCCGCCATTGGAGGCTGAATCAAGAACTCCAAACCCAATTCGACCCAGAAAACGACGACCCAAATCCCGCAAGAACAAGGAAGATATCGAAAATCAGAGAATGACCCACATCGCCGTTGAGCGAAATCGACGAAAACAGATGAATGAGTATCTCTCTGTTCTTAGATCCTTAATGCCAGAGTCTTATGTTCAAAGGGGGGATCAGGCTTCAATTATTGGGGGAGCTATTAATTTTGTGAAGGAGCTTGAGCAACAAGTTCAAGTTCTATCAACAATGGAAATAAAAACAAAGGGTTGTTCTTCATCAAAACCCCCTTTTTCTGAGTTTTTCACCTTCCCTCAGTTCAAATCAATGGAGGGTTGTTGTTCATTGGGTGAAAACGAAACCCAATGTTCTTCCATTGCTGATATTGAAGTAACAATGGTGGAAAATCATGCAAATTTGAAAATCAGATCAAAGAGAAGGCCAAAACAGGCCTTGAAAATCGTTGCTGGCTTGCATTCTCTTTGCCTCTCTGTTCTTCATCTCAATATCTCTACCATAAACCAAATTGTTCTTTACTGTCTAAGCGTGAAGGTTGAAGATGATTGCAAGCTGAATTCTGTTGATGAAATTGCATCTGCTCTGCATCAGTTGCTTTGTAGAATCGAAGAAGAATCAGTGATGAACTGA 879 40.5 MALEAVVFSQDLYTSFGGGIWTNGSFQFPQIPHDFPEKQTENFPFEDWNSSSSVFLPIPSPEEPAISRNPPLEAESRTPNPIRPRKRRPKSRKNKEDIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQQVQVLSTMEIKTKGCSSSKPPFSEFFTFPQFKSMEGCCSLGENETQCSSIADIEVTMVENHANLKIRSKRRPKQALKIVAGLHSLCLSVLHLNISTINQIVLYCLSVKVEDDCKLNSVDEIASALHQLLCRIEEESVMN 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8975120 8976603 + CmaCh05G011540.1 Cma05g01154 295272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01154 292 MobiDBLite consensus disorder prediction 54 102 - -
Cma05g01154 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 100 160 IPR036638 GO:0046983
Cma05g01154 292 SMART finulus 106 157 IPR011598 GO:0046983
Cma05g01154 292 Pfam Helix-loop-helix DNA-binding domain 101 152 IPR011598 GO:0046983
Cma05g01154 292 PANTHER MAX DIMERIZATION, MAD 1 292 - -
Cma05g01154 292 Gene3D - 83 165 IPR036638 GO:0046983
Cma05g01154 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 151 IPR011598 GO:0046983
Cma05g01154 292 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 292 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g01154 Cma11g01120 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00844 Cma-Chr4:4341379 Cma05g01154 Cma-Chr5:8975120 4.06E-58 dispersed
Cma05g00515 Cma-Chr5:2458214 Cma05g01154 Cma-Chr5:8975120 3.53E-89 dispersed
Cma05g01154 Cma-Chr5:8975120 Cma12g00225 Cma-Chr12:1104808 5.80E-84 dispersed
Cma11g01120 Cma-Chr11:6299622 Cma05g01154 Cma-Chr5:8975120 3.24E-75 transposed
Cma12g01085 Cma-Chr12:8570585 Cma05g01154 Cma-Chr5:8975120 2.65E-123 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35102 PF00010 HLH 6.80E-10 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01154 - - csv:101212782 460.685