Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma05g01154 | ATGGCATTAGAAGCTGTGGTTTTTTCTCAAGATCTTTACACCTCGTTTGGTGGAGGGATTTGGACAAATGGGAGCTTTCAATTTCCTCAAATCCCTCATGATTTTCCCGAGAAACAAACAGAAAATTTCCCTTTTGAAGATTGGAACTCATCCTCCTCTGTTTTTCTTCCTATTCCTTCCCCTGAAGAACCTGCCATTTCCAGAAATCCGCCATTGGAGGCTGAATCAAGAACTCCAAACCCAATTCGACCCAGAAAACGACGACCCAAATCCCGCAAGAACAAGGAAGATATCGAAAATCAGAGAATGACCCACATCGCCGTTGAGCGAAATCGACGAAAACAGATGAATGAGTATCTCTCTGTTCTTAGATCCTTAATGCCAGAGTCTTATGTTCAAAGGGGGGATCAGGCTTCAATTATTGGGGGAGCTATTAATTTTGTGAAGGAGCTTGAGCAACAAGTTCAAGTTCTATCAACAATGGAAATAAAAACAAAGGGTTGTTCTTCATCAAAACCCCCTTTTTCTGAGTTTTTCACCTTCCCTCAGTTCAAATCAATGGAGGGTTGTTGTTCATTGGGTGAAAACGAAACCCAATGTTCTTCCATTGCTGATATTGAAGTAACAATGGTGGAAAATCATGCAAATTTGAAAATCAGATCAAAGAGAAGGCCAAAACAGGCCTTGAAAATCGTTGCTGGCTTGCATTCTCTTTGCCTCTCTGTTCTTCATCTCAATATCTCTACCATAAACCAAATTGTTCTTTACTGTCTAAGCGTGAAGGTTGAAGATGATTGCAAGCTGAATTCTGTTGATGAAATTGCATCTGCTCTGCATCAGTTGCTTTGTAGAATCGAAGAAGAATCAGTGATGAACTGA | 879 | 40.5 | MALEAVVFSQDLYTSFGGGIWTNGSFQFPQIPHDFPEKQTENFPFEDWNSSSSVFLPIPSPEEPAISRNPPLEAESRTPNPIRPRKRRPKSRKNKEDIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQQVQVLSTMEIKTKGCSSSKPPFSEFFTFPQFKSMEGCCSLGENETQCSSIADIEVTMVENHANLKIRSKRRPKQALKIVAGLHSLCLSVLHLNISTINQIVLYCLSVKVEDDCKLNSVDEIASALHQLLCRIEEESVMN | 292 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 8975120 | 8976603 | + | CmaCh05G011540.1 | Cma05g01154 | 295272 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma05g01154 | 292 | MobiDBLite | consensus disorder prediction | 54 | 102 | - | - | |
Cma05g01154 | 292 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 100 | 160 | IPR036638 | GO:0046983 | |
Cma05g01154 | 292 | SMART | finulus | 106 | 157 | IPR011598 | GO:0046983 | |
Cma05g01154 | 292 | Pfam | Helix-loop-helix DNA-binding domain | 101 | 152 | IPR011598 | GO:0046983 | |
Cma05g01154 | 292 | PANTHER | MAX DIMERIZATION, MAD | 1 | 292 | - | - | |
Cma05g01154 | 292 | Gene3D | - | 83 | 165 | IPR036638 | GO:0046983 | |
Cma05g01154 | 292 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 100 | 151 | IPR011598 | GO:0046983 | |
Cma05g01154 | 292 | PANTHER | HELIX-LOOP-HELIX-LIKE PROTEIN | 1 | 292 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma05g01154 | Cma11g01120 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g00844 | Cma-Chr4:4341379 | Cma05g01154 | Cma-Chr5:8975120 | 4.06E-58 | dispersed | |
Cma05g00515 | Cma-Chr5:2458214 | Cma05g01154 | Cma-Chr5:8975120 | 3.53E-89 | dispersed | |
Cma05g01154 | Cma-Chr5:8975120 | Cma12g00225 | Cma-Chr12:1104808 | 5.80E-84 | dispersed | |
Cma11g01120 | Cma-Chr11:6299622 | Cma05g01154 | Cma-Chr5:8975120 | 3.24E-75 | transposed | |
Cma12g01085 | Cma-Chr12:8570585 | Cma05g01154 | Cma-Chr5:8975120 | 2.65E-123 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35102 | PF00010 | HLH | 6.80E-10 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma05g01154 | - | - | csv:101212782 | 460.685 |