Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01166 ATGAAACAAGATTCAAATATGGAAGCTGATTCTGCTCTGCCTGAATCTGCGGAGAAGGAAGTTGGTAGAACTGATGTACAGAAAACTGAGGGAAATGTTGAAGAGCTCTCAACAGAACATGAAGATAAGAAGAAAGAAGCAGCGTCTTCGGCAGTGCAAGAAGATAGCAAAATGAAAGAAGACTTTCCTACCGAACAAGTAGATGACATGAAAGAAGCTGTGACTGAAGTTGGGAACACGACTGAAGCTGAGAAGTCTGCTGAAAAGTGCATTGGAGAAGGGTCGCATAAAAAGAAAACTGTAAAACATTTGAAGGTAAAACGAAAAATTATAAAGAAATCCCCAGCTAGCGGTATGTTGAAGAAAAAAAAGGCACAGGCTGAGCAGGAAGACGACAAAAAGGAAAAAGAGGTTCCTGTAGCTCAAGAAGTGGGAGAAACTCTTGAAGCTCAGAATCCCACTGCAAATTCCAGCAAACCAGCGTCAAAGATGAAGAATAATAAAGATTTGAAGGTGAAAAGGAAAATTCTGAAGAAATCTCCAGGCAGCAGTCAACAGACTTATAAGCTTCAGAGTAGTCCTAAGGTGCAAGTCAGAAAGAAACTGGAGAATAATAAGAGTGTGTTGCTGGTAAATGGGGAAGGTAGTGAAAAAAAGGTCGAAGATATTGAGAAGGCTAACCAAAAGGAAAATATTAATAAAAGTATCTCAAAAGAGGAGCGTATGGAAAAGGGTGAAGAGACTTTTGCTAGGCATAAACGTAATTCTGAGCTTAAAAATAGAATAAAAGAAGGGAAGAATATAGAGAAGGCTGGTTCTTCAGATAAGAGCATAAAAAATCAGAAAAGGAAAGAAAAGGATAGAGCGCAAAAGAGTCGAAGAGATGATAAAAACAAAGAAAATCTTGGTGGATTGATTTTCATGTGCAGTGCAAAAACGAAGCCAGATTGTTTTCACTACAACTTAATGGGTGTTTCTGCTGGCAAACTGGATGTTGTCTTGGCAATCAAACCTGGATTGAAGCTTTTTCTCTATGATTTTGATCTCAGGCTTCTATATGGAATTTATGAAGCATCCTCTTCCGGTGGCATGAAACTTGAGCCAAAGGCTTTTAATGGGGCATTCCCTGCTCAGGTACGGTTCAAGGTTTACAAGGATTGTTTTCCACTACCTGAGAACATTTTCAAGAAGGCTATCCAAGAGAATTATTATGAGAAGCACAAGTTCAAAGCTGAACTCTCTGTTAAACAGGATTTCATCTTTCAGGTTAGGAAGCTCTCAGATCTTTTCCGACCAGTTGGACTTCACTCGAGTTCTGCTCCTATTCGGTTCCATCCAGAGCTACTAACTAGGGATAGAAATGTTCATGGGGAAGTTAAAGACATTCGGTTTAGTAACTCTAAGTCCAAGGGTGGTGATGCCAGGAAATACCATTTGTCATCTCATGGAAGGGATCGACAACGAAAAGAGGCACCTAGACATAGAGAGGAAGTTCCTCGTGATTTTTACCTAAATGAAAAGGACTATCGAACTTATGATCTCCGGGAAGAGAGAAGAAATTTAGATCCTGTGCCTCGGCCTTCTTTAGAAACATACCACAGAGATCATGATAGGGACTATCAAGTTAGACATCTAGAGCTCAGATACAGGGATGATGTCTCTGCATACGCACAGAGGGAAATAGTTCGCAAGGATCATGTATACTTTAATGGAAAAGATTATCCAGTTTACAGTATTGATTCTAGACCACAAATATCACCTCCTAGATCAATATCTGCTAGTGGTTCAGAACGCAATGCTTATGATTTGATTTACACTCGTCAATATGGCCTTCCTTCAACCAATCCATATCTGCCTCCTTCAACCGATCCATACCTGCTTCCTTCAATGAGGGACAAACCAGCCGCCCCTCCAACTTATTCAAGAAGTTATGTTACTGGTATTGAGCCCATGAGACATGCCATTGGTGCTCCATCACATTACAATGAGATGCATCTTGACAATGTGGGAAGTGATATGATGCCGGTTTCATCACGGTACTCATTTCCAGGTCCATCATTCTCGTATCGCTAA 2073 40.42 MKQDSNMEADSALPESAEKEVGRTDVQKTEGNVEELSTEHEDKKKEAASSAVQEDSKMKEDFPTEQVDDMKEAVTEVGNTTEAEKSAEKCIGEGSHKKKTVKHLKVKRKIIKKSPASGMLKKKKAQAEQEDDKKEKEVPVAQEVGETLEAQNPTANSSKPASKMKNNKDLKVKRKILKKSPGSSQQTYKLQSSPKVQVRKKLENNKSVLLVNGEGSEKKVEDIEKANQKENINKSISKEERMEKGEETFARHKRNSELKNRIKEGKNIEKAGSSDKSIKNQKRKEKDRAQKSRRDDKNKENLGGLIFMCSAKTKPDCFHYNLMGVSAGKLDVVLAIKPGLKLFLYDFDLRLLYGIYEASSSGGMKLEPKAFNGAFPAQVRFKVYKDCFPLPENIFKKAIQENYYEKHKFKAELSVKQDFIFQVRKLSDLFRPVGLHSSSAPIRFHPELLTRDRNVHGEVKDIRFSNSKSKGGDARKYHLSSHGRDRQRKEAPRHREEVPRDFYLNEKDYRTYDLREERRNLDPVPRPSLETYHRDHDRDYQVRHLELRYRDDVSAYAQREIVRKDHVYFNGKDYPVYSIDSRPQISPPRSISASGSERNAYDLIYTRQYGLPSTNPYLPPSTDPYLLPSMRDKPAAPPTYSRSYVTGIEPMRHAIGAPSHYNEMHLDNVGSDMMPVSSRYSFPGPSFSYR 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9040294 9042542 - CmaCh05G011660.1 Cma05g01166 295284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01166 690 SMART dcd 300 432 IPR013989 -
Cma05g01166 690 MobiDBLite consensus disorder prediction 82 97 - -
Cma05g01166 690 Coils Coil 279 299 - -
Cma05g01166 690 MobiDBLite consensus disorder prediction 461 499 - -
Cma05g01166 690 MobiDBLite consensus disorder prediction 13 72 - -
Cma05g01166 690 ProSiteProfiles DCD domain profile. 300 427 IPR013989 -
Cma05g01166 690 MobiDBLite consensus disorder prediction 147 163 - -
Cma05g01166 690 MobiDBLite consensus disorder prediction 123 142 - -
Cma05g01166 690 PANTHER DCD (DEVELOPMENT AND CELL DEATH) DOMAIN PROTEIN-RELATED 151 685 - -
Cma05g01166 690 MobiDBLite consensus disorder prediction 179 198 - -
Cma05g01166 690 MobiDBLite consensus disorder prediction 1 297 - -
Cma05g01166 690 PANTHER DCD (DEVELOPMENT AND CELL DEATH) DOMAIN PROTEIN 151 685 - -
Cma05g01166 690 MobiDBLite consensus disorder prediction 98 119 - -
Cma05g01166 690 MobiDBLite consensus disorder prediction 215 297 - -
Cma05g01166 690 Pfam Development and cell death domain 303 430 IPR013989 -
Cma05g01166 690 Coils Coil 26 46 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g01166 Cma12g01093 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01166 Cma-Chr5:9040294 Cma14g00037 Cma-Chr14:165333 2.32E-18 dispersed
Cma06g01722 Cma-Chr6:10553960 Cma05g01166 Cma-Chr5:9040294 1.88E-29 transposed
Cma12g01093 Cma-Chr12:8619262 Cma05g01166 Cma-Chr5:9040294 7.03E-151 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01166 - - cmos:111450407 1229.93