Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma05g01167 | ATGAATCTAAAACCATCTCTTCATCTCTTAAACAAAATCCCAGCTGCTCTGCTGATTCAATCGCTTCCCGCCGATCTCTTTGCAGAGTTGAGAAAGATGTTAAGATTCCAAGTGGGCGGGAAGGTGGTCGAGAGAGTTGACTTGTTGAGAAAGAAACACTGGGCATGGCGGTTGGATCTGTGGCCATTCGCCATTCTTTATGTGGCCTGGCTTGCCGTCGTGGTTCCTAGTATAGACTTCGGGGATGCTGTCATTGTTTTAGGTGGACTGGCGGCTCTTCATGTTTTGTTCTTGCTTTTCACTGCTTGTTTCGTACTTGCATTTGATGATGCTTATGCATTGCCATTGCATTTGAGATGTAGACTTGTCATGTTGTTGCCTGCAGTTAATGATATTTACCATGCTGATACATGCAAGATAGTTCCTGCAAAATTTTCAGGCTCGAAAGAAATTGTTCAGCTTCATTTTCGTAAGATTCTGGCAGGTTCTGTATCTGCAGTGGATACTGAGGAGATCTACTTTGATTTCAGAAAACAAAGATTTATTTATTCGAAGGAGAAGGAGACTTTCTGCAAGCTTCCTTACCCAACAAAAGAAACTGTTGGTTATTATCTAAAGAACACTGGCTATGGCTCTGAGCCTAAAGTTGTAGCTGCTGTTGAAAAATGGGGACGCAATATCCTGTTTACTCTGTTTATGCTGTTTATGTTTGAGTCAACAATGGCAAAAAGTCGGTTAAAGACCTTAAGTGAGTTAAGGCGTGTTAGAGTGGATACTCAGACCTTAATGGTGCATCGTTGTGGAAAGTGGGTGAAGCTACCTGGAACTGAGCTTTTGCCAGGAGATGTTGTCTCTGTAGGGCGTGATTCTGGTCGGAGTGGTGAAGATAAGTCTGTACCTGCTGATATGCTTATCTTGGCTGGAAGTGCTATTGTTAATGAAGCCATTCTTACTGGGGAGTCTACACCACAATGGAAGAGCTTACCTTCCCAGGTTTCAATATCTGGGAGAGGAATTGAGGAGAAGTTATCAGCTAAAAGAGACAAAAGTCATATGTTATTTGGTGGGACCAAAATATTGCAGCATACTCCAGATAAGACCTTTCCTCTTAGAACCCCTGATGGTGGCTGCCTAGCAGTTGTTTTGAGGACTGGTTTCGAAACAAGTCAAGGGAAACTAATGCGCACAATTTTATTTTCTACGGAGAGGGTTACAGCTAACAGTTGGGAAAGTGGCCTATTTATCATGTTCTTAGTTGTATTTGCCGTTATAGCTGCTGGTTACGTACTTGTAAAGGGATTGGAAGATCCCACGAGAAGCAAGTACAAGCTTTTCCTTAGTTGCTCACTTATAATCACTTCTGTAATTCCTCCTGAACTACCAATGGAACTGTCAATAGCCGTTAATACATCATTAATTGCTCTGGCACGTCGGGGAATATTTTGTACAGAGCCTTTCCGAATACCATTTGCTGGAAAGGTTGATATTTGTTGTTTCGATAAAACAGGAACGTTGACATCAGATGACATGGAGTTTCGAGGAGTAGTTGGGGTGAGTGATAAGGAGGATTTGGAAACTGACATGACTAGTGTGTCTTTGCGCACAGTTGAAATTCTGGCTTCTTGCCATGCATTGGTGTTTGTGGACAACAAGTTGGTGGGGGATCCTCTTGAAAAGGCTGCACTCAAGGGAGTTGATTGGGCTTACAAATCTGATGAGAAAGCCATTCCCAGAAAGGGAAGTGGGCACGCTGTCCAGATTGTTCAGAGGCACCACTTTGCTTCACATTTGAAGAGAATGGCAGTTGTTGGTGCCCCCGAAACCATCCAGGAGAGGCTCACGGATATGCCTTCATTTTATGTTGAGACGTATAAGAAATATACACGACAAGGTTCCCGTGTCCTTGCTCTTGCTTACAAATCACTTCCAGACATGACAGTTAGTGAAGCTAGAGCCCTGGATAGGGACTTGGTGGAGAGTGACCTTACATTTGCAGGTTTTGCGGTGTTCAATTGTCCAATTCGAGCAGATTCGGCTACAATATTATCTGAGCTTAAAGTATCATCCCATGACTTGGTAATGATTACTGGTGACCAAGCTTTAACAGCGTGCCACGTAGCTAGCCAAGTTCATATTACCTCAAAGCAGATTTTAATTCTCAATTCAAAGAAGGGAACTGAGGAATATGAATGGCTCTCCCCAGATGAGTTACAGACAGTTCCCTACAGAGAGAAAGAGGTGGGAGATTTATCGGAGATGTATGATCTGTGTATTGGAGGTGACTGCATCGAAATGCTACAACGCACCTTCACTGTGCTGGATGTTATTCCATACGTTAAGGTTTTTGCAAGAGTTGCTCCTGAGCAGAAAGAACTCATATTGACCACTTTTAAAACAGTAGGAAGAATGACGTTGATGTGTGGGGATGGAACGAACGATGTCGGTGCTTTGAAACAGGCCCATGTAGGAATTGCTCTCCTGAACGCTGTCCCTCCTCCTCAAAGTGGCAACTCTTCTTCAGAAGCATCTAAAGATGACGCTGCTCGGTCTGCAAAGTCGAAGAAATCTAAGCTTTCATCCGAATCATCAGGAAAACCACTTCTAGCTGGAGAAGGTTCTTCAAAAAGCAAAGGTAGTGCAAAACTGGATTCTGCTACTGAGCAAGCTAGTAACCGTGCACGGACACCTGCCGAGATGCAAAGACAGAAGCTAAAGAAACTTATGGATGAGTTAAATGAAGAGGGTGATGGGCGCTCCGCCCCTATTGTCAAGCTTGGAGATGCATCCATGGCATCACCATTCACAGCAAAGCATGCTTCTGTTGCCCCGACTACGGACATTATTCGCCAAGGTCGAAGTACTCTGGTGACAACTCTCCAGATGTTCAAAATACTCGGTCTCAACTGCCTCGCTACCGCCTATGTACTCAGTGTTATGTATTTGGACGGTGTAAAGCTTGGCGATGTTCAAGCGACCATCAGTGGAGTATTCACAGCAGCCTTCTTTCTGTTCATCTCACATGCGCGCCCCCTTCCAACACTTTCAGCTGAACGCCCCCATCCACACATCTTTTGTTCTTATGTTCTCCTTTCTCTGTTAGGCCAATTTGCTATCCACTTATTTTTCTTGATGTCTTCAGTGAAAGAAGCCGAAAAGCACATGCCTGATGAATGTATAGAGCCAGATTCAGATTTTCATCCCAACTTGGTTAACACAGTTTCATACATGGTAAGCATGATGCTTCAGGTGGCAACCTTTTCTGTAAACTACATGGGTCATCCCTTCAACCAGAGCGTATCCGAAAACAAGCCATTCTTATACGCTCTTTTGGCTGCGGTTGGTTTCTTCACCGTTATTACCTCGGATTTGTTCAGAGATCTCAACGACTTGCTGAAACTGGTTCCACTGCCTGCGGGATTGAGGGATAAGCTTCTAGCTTGGGCACTTCTTATGTTCTTGTGCTGTTACTCCTGGGAAAGACTATTGAGATGGATGTTCCCAGGTAAAATCCCGGCATGGCGAAAGCGACAACGACTGGCAGCTGCTAATCTGGAGAAGAAGAAACAGCTCTCCTCACATTATTTCTTTGTTTTCTTGATGGAGTTTTGGTTATGGATTGCCAATAATGCACGTAACTTGTTCGGATTCATGGCTTCTTCCGTTTGTTACTCGCCTTTGATATTTGAAATGTTCGATAGAATGAATTATGTATTGCCTGATAACTGTTCGACAAAATGCCTCATAGAGGTTGAATCTGCTCATTATGCACCCAGAAGTTTCTTTGGTGTGGAGGACTTTGTAGACGATGATAATAGTAGGCCATACACATACCAAAAGGGGAAGAAATCCAAAAATCCAAAAAAGCACGTATCATTCAAACAACGGACGGTAGCCTACATGGAGCCATTTACACTCGACGTGTTCATCTCGAAGCGGTTTGTTTCAGCATCGCTCACGCACAGGGTGACTTGTAAACAAGTTGCGGTTGCAGGTACGAACTCGAAAGATATCAAAGCTGTTCTTAAGTCTCGTTCGGACATACCTGCTTGTTTGGCTGTAGGCCGTATTTTATCTGAGAGGGCTAAAGAAGCTGATGTTTATACTGCTAGTTATACTCCTAGAGAGAGGGATAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAGTCTCTTATTGATAATGGGATTGATGTGTGTTATTATATCAAGGTTTCGATTCGATTTCGTTACATTGGAAAGCAATCGAGGGAACACGAAATCCCCATCTCTCTTGATCGTTCATCGTTTCCAGATTATCGGTTCTCTTCTCGGATCGCTCTCTATTTTCGTCGGCTTCCCAGAGCCTTGGGGGAAGAACTGTACTGGGAAAATTGGAATTCTTTGGAAATTTGCAGCAAGGGTTATCGTATGGCTGTTATGGAAGGAGCATAA | 4428 | 43.68 | MNLKPSLHLLNKIPAALLIQSLPADLFAELRKMLRFQVGGKVVERVDLLRKKHWAWRLDLWPFAILYVAWLAVVVPSIDFGDAVIVLGGLAALHVLFLLFTACFVLAFDDAYALPLHLRCRLVMLLPAVNDIYHADTCKIVPAKFSGSKEIVQLHFRKILAGSVSAVDTEEIYFDFRKQRFIYSKEKETFCKLPYPTKETVGYYLKNTGYGSEPKVVAAVEKWGRNILFTLFMLFMFESTMAKSRLKTLSELRRVRVDTQTLMVHRCGKWVKLPGTELLPGDVVSVGRDSGRSGEDKSVPADMLILAGSAIVNEAILTGESTPQWKSLPSQVSISGRGIEEKLSAKRDKSHMLFGGTKILQHTPDKTFPLRTPDGGCLAVVLRTGFETSQGKLMRTILFSTERVTANSWESGLFIMFLVVFAVIAAGYVLVKGLEDPTRSKYKLFLSCSLIITSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDMEFRGVVGVSDKEDLETDMTSVSLRTVEILASCHALVFVDNKLVGDPLEKAALKGVDWAYKSDEKAIPRKGSGHAVQIVQRHHFASHLKRMAVVGAPETIQERLTDMPSFYVETYKKYTRQGSRVLALAYKSLPDMTVSEARALDRDLVESDLTFAGFAVFNCPIRADSATILSELKVSSHDLVMITGDQALTACHVASQVHITSKQILILNSKKGTEEYEWLSPDELQTVPYREKEVGDLSEMYDLCIGGDCIEMLQRTFTVLDVIPYVKVFARVAPEQKELILTTFKTVGRMTLMCGDGTNDVGALKQAHVGIALLNAVPPPQSGNSSSEASKDDAARSAKSKKSKLSSESSGKPLLAGEGSSKSKGSAKLDSATEQASNRARTPAEMQRQKLKKLMDELNEEGDGRSAPIVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDVQATISGVFTAAFFLFISHARPLPTLSAERPHPHIFCSYVLLSLLGQFAIHLFFLMSSVKEAEKHMPDECIEPDSDFHPNLVNTVSYMVSMMLQVATFSVNYMGHPFNQSVSENKPFLYALLAAVGFFTVITSDLFRDLNDLLKLVPLPAGLRDKLLAWALLMFLCCYSWERLLRWMFPGKIPAWRKRQRLAAANLEKKKQLSSHYFFVFLMEFWLWIANNARNLFGFMASSVCYSPLIFEMFDRMNYVLPDNCSTKCLIEVESAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVCYYIKVSIRFRYIGKQSREHEIPISLDRSSFPDYRFSSRIALYFRRLPRALGEELYWENWNSLEICSKGYRMAVMEGA | 1475 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 9044700 | 9068315 | - | CmaCh05G011670.1 | Cma05g01167 | 295285 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma05g01167 | 1475 | PANTHER | CATION-TRANSPORTING ATPASE | 33 | 227 | - | - | |
| Cma05g01167 | 1475 | Coils | Coil | 894 | 914 | - | - | |
| Cma05g01167 | 1475 | Gene3D | - | 1279 | 1396 | - | - | |
| Cma05g01167 | 1475 | SUPERFAMILY | Translational machinery components | 1281 | 1395 | - | - | |
| Cma05g01167 | 1475 | PRINTS | P-type cation-transporting ATPase superfamily signature | 807 | 826 | - | - | |
| Cma05g01167 | 1475 | PRINTS | P-type cation-transporting ATPase superfamily signature | 313 | 327 | - | - | |
| Cma05g01167 | 1475 | PRINTS | P-type cation-transporting ATPase superfamily signature | 688 | 698 | - | - | |
| Cma05g01167 | 1475 | PRINTS | P-type cation-transporting ATPase superfamily signature | 498 | 512 | - | - | |
| Cma05g01167 | 1475 | MobiDBLite | consensus disorder prediction | 828 | 901 | - | - | |
| Cma05g01167 | 1475 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 520 | 667 | IPR023299 | GO:0000166 | |
| Cma05g01167 | 1475 | PANTHER | CATION-TRANSPORTING ATPASE | 228 | 1182 | - | - | |
| Cma05g01167 | 1475 | SUPERFAMILY | HAD-like | 493 | 832 | IPR036412 | - | |
| Cma05g01167 | 1475 | SFLD | p-type atpase | 479 | 953 | IPR044492 | - | |
| Cma05g01167 | 1475 | MobiDBLite | consensus disorder prediction | 877 | 897 | - | - | |
| Cma05g01167 | 1475 | SUPERFAMILY | Calcium ATPase, transduction domain A | 261 | 397 | IPR008250 | - | |
| Cma05g01167 | 1475 | Pfam | E1-E2 ATPase | 261 | 478 | - | - | |
| Cma05g01167 | 1475 | Gene3D | - | 493 | 666 | IPR023299 | GO:0000166 | |
| Cma05g01167 | 1475 | Gene3D | - | 232 | 398 | - | - | |
| Cma05g01167 | 1475 | Pfam | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast | 1281 | 1396 | IPR005484 | GO:0003735|GO:0005840|GO:0006412 | |
| Cma05g01167 | 1475 | PANTHER | CATION-TRANSPORTING ATPASE-RELATED | 33 | 227 | - | - | |
| Cma05g01167 | 1475 | MobiDBLite | consensus disorder prediction | 845 | 859 | - | - | |
| Cma05g01167 | 1475 | TIGRFAM | P-ATPase-V: P-type ATPase of unknown pump specificity (type V) | 228 | 1147 | IPR006544 | GO:0006812|GO:0016021|GO:0019829|GO:0140358 | |
| Cma05g01167 | 1475 | CDD | Ribosomal_L18_L5e | 1293 | 1395 | - | - | |
| Cma05g01167 | 1475 | PANTHER | CATION-TRANSPORTING ATPASE-RELATED | 228 | 1182 | - | - | |
| Cma05g01167 | 1475 | SFLD | Haloacid Dehalogenase | 479 | 953 | - | - | |
| Cma05g01167 | 1475 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 500 | 506 | IPR018303 | - | |
| Cma05g01167 | 1475 | Gene3D | - | 667 | 844 | IPR023214 | - | |
| Cma05g01167 | 1475 | Pfam | haloacid dehalogenase-like hydrolase | 495 | 711 | - | - | |
| Cma05g01167 | 1475 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 246 | 1167 | IPR023298 | - | |
| Cma05g01167 | 1475 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 411 | 527 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Cma05g01167 | 1475 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 778 | 826 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Cma05g01167 | 1475 | ProSitePatterns | Hypothetical cof family signature 2. | 807 | 829 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma05g01167 | Cma-Chr5:9044700 | Cma06g01169 | Cma-Chr6:7864409 | 6.64E-30 | dispersed | |
| Cma05g01167 | Cma-Chr5:9044700 | Cma12g01093 | Cma-Chr12:8619262 | 0 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma05g01167 | K14950 | - | csv:101215828 | 2026.91 |