Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma05g01174 | ATGGGTGCTCAGAGAAAGGGGGCATCGCGGGTTTCCGAGGACTCCGAGGAGTTGGCACGAGTTTCGTTGCAGGCAGTTCTTCTTGCCGATAGCTTTACCACTAAGTTTCGTCCCATAACGCTTGAACGACCCAAGGTATTACTGCCGCTGGTAAATGTCCCTATGATTAATTATGCCTTATCCTGGCTCGAATCGGCTGGTGTTGAAGAGGTGTTTGTATTTTGCTGTGCTAACTCGAAGCAAGTAATTGATTACTTGGAGAACTCTGAGTGGGTATCCCTACCAGACTTTGCAGTCACAACTATAGAGTCGCACAACTCCATTAGTGCTGGAGACGCCCTGCGTTTGATCTATGAAAGAAATGTGATACATGGTGATTTTGTACTTATCACTGGAGACACCATAAGCAACATGCCACTTACGCAAGCTCTTCAAGAACACAAAGATAGAAAGAAGAAAGATAGTAATGCCGTGATGACTATGGTTGTCAAACGGTCAAAGCCTTCTCCAATCACACACCAATCTCGGCTTGGCACTGATGAACTGTTTATGGCAATTGATCATAATTCTAAGCAGCTCTTATACTATGAGGATAGGGCTGACGATTCAAAAGGAATTATACATCTGGACAAGTCATTGCTAATGGATAATCCTTCCATATCACTTCATAACGACTTGCAGGATTGTTATATAGACATATGCTCCCCAGAAGTACTCAGCCTGTTTACTGACAATTTTGACTACCAACATCTACGTCGCCATTTTGTCAAGGGTTTGCTCTTAGATGATATCATGGGTTACAAGATTTACACACACGAAATTTGCTCAAGCTATGCAGCCAGAATCGATAATTATCGAAGCTATGACACCGTTAGTAAGGACATAATACAAAGGTGGACATATCCACTGGTACCGGATGTTAAATTCTTTGGGAACTCTGCTTATAAACTTGAAAGGCAGGGAATGTATCGAGCATCAGAAATACTGCAGGCACGTTCTGCACAGGTTGGTCCGTTTACTGTTATTGGAGATAACAGCAAAATTGGTGATAACACCAAAATTACGAATTCAATTATTGGGCAAGGTTGTAGCATTGGATCAAATGTTACAATTGAAGGCTCTTATATATGGGACAACGTCACCATTGAAGATGGCTGTAAACTTAGTCATGCTATCGTCTGTGATGGAGTTATTATAAAGTCAGGGGCAGAACTGGAAGCTGGTGTAATTTTGTCTTTCAAGGTTGTTGTAGGGGATCAGTTTATTGTTCCATCATATTCAAAGGTATCTTTGTTTCAGCAGCCAATCAATCAAGACAGCGACGATGAGCTGGAATATGCAGATAATAGCAGTGGTATTGTAGAATTTGCAGATACAACGGACAAGTCAAATAATGAACTGATGTCCAAATCGCTGGAAATGCAAGGCTGGCCTGCATCTGAGCTAGGCAATGGAGGTATAGGGCATGTTTGGTCAATTTGTGAAGGAAGTGTTGAAGAAGAATGGAGGCACTCAGTTGCACCCATTCCTGCCGATAAACTTGAGAAGACTCTGCAAAAAGCGACAGATGATGAGCTGGAGTTAACTCGCGATGCTAATGTTCTTCCAACTTCAGGAGAGTTGAAGTCTGACTCAAATGTCTCAGATGGTGATGATAATGAAGACTCTAGAGATGACTCCATCCACTTTGAGAAAGAGGTTGAAGCAACGTTTCTGAGGGGTGTGCATGAAAATATTAAAGTAGACAATGTAATTTTGGAAGTGAACTCATTGCGGTTGTCATATAATAAGGTGGCTGCAGATTGTGCAGGAGCATTGTTTTATTCTCTGATGAAATTTGCCTTAGACTCTCCACATGGTTCATCTAGTGAGCTACTGCAAAACACTACGAATATAATTACGAAATGGAAAAAACTTTTGAAGTACTACTTAACTGACATGGATGAAGAGATTGAAGTGATATTAAAATTTGAAGAGATGTGCCTGGAATCGGCCAAGGAATTCACTCCACATTTTACTAAGATTTTGTGTCATCTATATGACCAAGAAATCATTCAAGAAGATGCTATTCTAAGGTGGGATGATGAGAAAAAGGAAGCGGATGATTCAGATAAACTTTTCGTTAAGCAGGCTGAGAAATTCATCGAATGGTTAAGAGTTGCATCAGAAGAGGAAGATGATGAAGAGGAGGAATAG | 2196 | 41.03 | MGAQRKGASRVSEDSEELARVSLQAVLLADSFTTKFRPITLERPKVLLPLVNVPMINYALSWLESAGVEEVFVFCCANSKQVIDYLENSEWVSLPDFAVTTIESHNSISAGDALRLIYERNVIHGDFVLITGDTISNMPLTQALQEHKDRKKKDSNAVMTMVVKRSKPSPITHQSRLGTDELFMAIDHNSKQLLYYEDRADDSKGIIHLDKSLLMDNPSISLHNDLQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIYTHEICSSYAARIDNYRSYDTVSKDIIQRWTYPLVPDVKFFGNSAYKLERQGMYRASEILQARSAQVGPFTVIGDNSKIGDNTKITNSIIGQGCSIGSNVTIEGSYIWDNVTIEDGCKLSHAIVCDGVIIKSGAELEAGVILSFKVVVGDQFIVPSYSKVSLFQQPINQDSDDELEYADNSSGIVEFADTTDKSNNELMSKSLEMQGWPASELGNGGIGHVWSICEGSVEEEWRHSVAPIPADKLEKTLQKATDDELELTRDANVLPTSGELKSDSNVSDGDDNEDSRDDSIHFEKEVEATFLRGVHENIKVDNVILEVNSLRLSYNKVAADCAGALFYSLMKFALDSPHGSSSELLQNTTNIITKWKKLLKYYLTDMDEEIEVILKFEEMCLESAKEFTPHFTKILCHLYDQEIIQEDAILRWDDEKKEADDSDKLFVKQAEKFIEWLRVASEEEDDEEEE | 731 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 9100849 | 9112808 | + | CmaCh05G011740.1 | Cma05g01174 | 295292 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma05g01174 | 731 | CDD | eIF-2B_epsilon_N | 23 | 239 | IPR035543 | - | |
Cma05g01174 | 731 | Gene3D | - | 550 | 729 | - | - | |
Cma05g01174 | 731 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 22 | 369 | IPR029044 | - | |
Cma05g01174 | 731 | PANTHER | TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON | 10 | 729 | - | - | |
Cma05g01174 | 731 | Pfam | Nucleotidyl transferase | 25 | 168 | IPR005835 | GO:0009058|GO:0016779 | |
Cma05g01174 | 731 | Pfam | Bacterial transferase hexapeptide (six repeats) | 340 | 373 | IPR001451 | - | |
Cma05g01174 | 731 | Gene3D | Hexapeptide repeat proteins | 319 | 426 | - | - | |
Cma05g01174 | 731 | MobiDBLite | consensus disorder prediction | 529 | 560 | - | - | |
Cma05g01174 | 731 | Pfam | eIF4-gamma/eIF5/eIF2-epsilon | 649 | 728 | IPR003307 | GO:0005515 | |
Cma05g01174 | 731 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 9 | 303 | IPR029044 | - | |
Cma05g01174 | 731 | CDD | W2_eIF2B_epsilon | 558 | 722 | IPR044123 | GO:0005085|GO:0031369 | |
Cma05g01174 | 731 | ProSiteProfiles | W2 domain profile. | 557 | 728 | IPR003307 | GO:0005515 | |
Cma05g01174 | 731 | SMART | 542_3 | 637 | 724 | IPR003307 | GO:0005515 | |
Cma05g01174 | 731 | CDD | LbH_eIF2B_epsilon | 341 | 419 | - | - | |
Cma05g01174 | 731 | SUPERFAMILY | Trimeric LpxA-like enzymes | 267 | 429 | IPR011004 | - | |
Cma05g01174 | 731 | Coils | Coil | 511 | 531 | - | - | |
Cma05g01174 | 731 | SUPERFAMILY | ARM repeat | 563 | 719 | IPR016024 | - | |
Cma05g01174 | 731 | MobiDBLite | consensus disorder prediction | 545 | 560 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00488 | Cma-Chr1:2479143 | Cma05g01174 | Cma-Chr5:9100849 | 1.89E-06 | dispersed | |
Cma05g00874 | Cma-Chr5:6144320 | Cma05g01174 | Cma-Chr5:9100849 | 1.18E-06 | dispersed | |
Cma05g01174 | Cma-Chr5:9100849 | Cma10g00992 | Cma-Chr10:5146070 | 3.97E-22 | dispersed | |
Cma12g01098 | Cma-Chr12:8683389 | Cma05g01174 | Cma-Chr5:9100849 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma05g01174 | K03240 | - | csv:101217025 | 1313.52 |