Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01174 ATGGGTGCTCAGAGAAAGGGGGCATCGCGGGTTTCCGAGGACTCCGAGGAGTTGGCACGAGTTTCGTTGCAGGCAGTTCTTCTTGCCGATAGCTTTACCACTAAGTTTCGTCCCATAACGCTTGAACGACCCAAGGTATTACTGCCGCTGGTAAATGTCCCTATGATTAATTATGCCTTATCCTGGCTCGAATCGGCTGGTGTTGAAGAGGTGTTTGTATTTTGCTGTGCTAACTCGAAGCAAGTAATTGATTACTTGGAGAACTCTGAGTGGGTATCCCTACCAGACTTTGCAGTCACAACTATAGAGTCGCACAACTCCATTAGTGCTGGAGACGCCCTGCGTTTGATCTATGAAAGAAATGTGATACATGGTGATTTTGTACTTATCACTGGAGACACCATAAGCAACATGCCACTTACGCAAGCTCTTCAAGAACACAAAGATAGAAAGAAGAAAGATAGTAATGCCGTGATGACTATGGTTGTCAAACGGTCAAAGCCTTCTCCAATCACACACCAATCTCGGCTTGGCACTGATGAACTGTTTATGGCAATTGATCATAATTCTAAGCAGCTCTTATACTATGAGGATAGGGCTGACGATTCAAAAGGAATTATACATCTGGACAAGTCATTGCTAATGGATAATCCTTCCATATCACTTCATAACGACTTGCAGGATTGTTATATAGACATATGCTCCCCAGAAGTACTCAGCCTGTTTACTGACAATTTTGACTACCAACATCTACGTCGCCATTTTGTCAAGGGTTTGCTCTTAGATGATATCATGGGTTACAAGATTTACACACACGAAATTTGCTCAAGCTATGCAGCCAGAATCGATAATTATCGAAGCTATGACACCGTTAGTAAGGACATAATACAAAGGTGGACATATCCACTGGTACCGGATGTTAAATTCTTTGGGAACTCTGCTTATAAACTTGAAAGGCAGGGAATGTATCGAGCATCAGAAATACTGCAGGCACGTTCTGCACAGGTTGGTCCGTTTACTGTTATTGGAGATAACAGCAAAATTGGTGATAACACCAAAATTACGAATTCAATTATTGGGCAAGGTTGTAGCATTGGATCAAATGTTACAATTGAAGGCTCTTATATATGGGACAACGTCACCATTGAAGATGGCTGTAAACTTAGTCATGCTATCGTCTGTGATGGAGTTATTATAAAGTCAGGGGCAGAACTGGAAGCTGGTGTAATTTTGTCTTTCAAGGTTGTTGTAGGGGATCAGTTTATTGTTCCATCATATTCAAAGGTATCTTTGTTTCAGCAGCCAATCAATCAAGACAGCGACGATGAGCTGGAATATGCAGATAATAGCAGTGGTATTGTAGAATTTGCAGATACAACGGACAAGTCAAATAATGAACTGATGTCCAAATCGCTGGAAATGCAAGGCTGGCCTGCATCTGAGCTAGGCAATGGAGGTATAGGGCATGTTTGGTCAATTTGTGAAGGAAGTGTTGAAGAAGAATGGAGGCACTCAGTTGCACCCATTCCTGCCGATAAACTTGAGAAGACTCTGCAAAAAGCGACAGATGATGAGCTGGAGTTAACTCGCGATGCTAATGTTCTTCCAACTTCAGGAGAGTTGAAGTCTGACTCAAATGTCTCAGATGGTGATGATAATGAAGACTCTAGAGATGACTCCATCCACTTTGAGAAAGAGGTTGAAGCAACGTTTCTGAGGGGTGTGCATGAAAATATTAAAGTAGACAATGTAATTTTGGAAGTGAACTCATTGCGGTTGTCATATAATAAGGTGGCTGCAGATTGTGCAGGAGCATTGTTTTATTCTCTGATGAAATTTGCCTTAGACTCTCCACATGGTTCATCTAGTGAGCTACTGCAAAACACTACGAATATAATTACGAAATGGAAAAAACTTTTGAAGTACTACTTAACTGACATGGATGAAGAGATTGAAGTGATATTAAAATTTGAAGAGATGTGCCTGGAATCGGCCAAGGAATTCACTCCACATTTTACTAAGATTTTGTGTCATCTATATGACCAAGAAATCATTCAAGAAGATGCTATTCTAAGGTGGGATGATGAGAAAAAGGAAGCGGATGATTCAGATAAACTTTTCGTTAAGCAGGCTGAGAAATTCATCGAATGGTTAAGAGTTGCATCAGAAGAGGAAGATGATGAAGAGGAGGAATAG 2196 41.03 MGAQRKGASRVSEDSEELARVSLQAVLLADSFTTKFRPITLERPKVLLPLVNVPMINYALSWLESAGVEEVFVFCCANSKQVIDYLENSEWVSLPDFAVTTIESHNSISAGDALRLIYERNVIHGDFVLITGDTISNMPLTQALQEHKDRKKKDSNAVMTMVVKRSKPSPITHQSRLGTDELFMAIDHNSKQLLYYEDRADDSKGIIHLDKSLLMDNPSISLHNDLQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIYTHEICSSYAARIDNYRSYDTVSKDIIQRWTYPLVPDVKFFGNSAYKLERQGMYRASEILQARSAQVGPFTVIGDNSKIGDNTKITNSIIGQGCSIGSNVTIEGSYIWDNVTIEDGCKLSHAIVCDGVIIKSGAELEAGVILSFKVVVGDQFIVPSYSKVSLFQQPINQDSDDELEYADNSSGIVEFADTTDKSNNELMSKSLEMQGWPASELGNGGIGHVWSICEGSVEEEWRHSVAPIPADKLEKTLQKATDDELELTRDANVLPTSGELKSDSNVSDGDDNEDSRDDSIHFEKEVEATFLRGVHENIKVDNVILEVNSLRLSYNKVAADCAGALFYSLMKFALDSPHGSSSELLQNTTNIITKWKKLLKYYLTDMDEEIEVILKFEEMCLESAKEFTPHFTKILCHLYDQEIIQEDAILRWDDEKKEADDSDKLFVKQAEKFIEWLRVASEEEDDEEEE 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9100849 9112808 + CmaCh05G011740.1 Cma05g01174 295292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01174 731 CDD eIF-2B_epsilon_N 23 239 IPR035543 -
Cma05g01174 731 Gene3D - 550 729 - -
Cma05g01174 731 SUPERFAMILY Nucleotide-diphospho-sugar transferases 22 369 IPR029044 -
Cma05g01174 731 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 10 729 - -
Cma05g01174 731 Pfam Nucleotidyl transferase 25 168 IPR005835 GO:0009058|GO:0016779
Cma05g01174 731 Pfam Bacterial transferase hexapeptide (six repeats) 340 373 IPR001451 -
Cma05g01174 731 Gene3D Hexapeptide repeat proteins 319 426 - -
Cma05g01174 731 MobiDBLite consensus disorder prediction 529 560 - -
Cma05g01174 731 Pfam eIF4-gamma/eIF5/eIF2-epsilon 649 728 IPR003307 GO:0005515
Cma05g01174 731 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 9 303 IPR029044 -
Cma05g01174 731 CDD W2_eIF2B_epsilon 558 722 IPR044123 GO:0005085|GO:0031369
Cma05g01174 731 ProSiteProfiles W2 domain profile. 557 728 IPR003307 GO:0005515
Cma05g01174 731 SMART 542_3 637 724 IPR003307 GO:0005515
Cma05g01174 731 CDD LbH_eIF2B_epsilon 341 419 - -
Cma05g01174 731 SUPERFAMILY Trimeric LpxA-like enzymes 267 429 IPR011004 -
Cma05g01174 731 Coils Coil 511 531 - -
Cma05g01174 731 SUPERFAMILY ARM repeat 563 719 IPR016024 -
Cma05g01174 731 MobiDBLite consensus disorder prediction 545 560 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00488 Cma-Chr1:2479143 Cma05g01174 Cma-Chr5:9100849 1.89E-06 dispersed
Cma05g00874 Cma-Chr5:6144320 Cma05g01174 Cma-Chr5:9100849 1.18E-06 dispersed
Cma05g01174 Cma-Chr5:9100849 Cma10g00992 Cma-Chr10:5146070 3.97E-22 dispersed
Cma12g01098 Cma-Chr12:8683389 Cma05g01174 Cma-Chr5:9100849 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01174 K03240 - csv:101217025 1313.52