Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma05g01227 | ATGGCGAACCGTTGGTGGACTTCCAGCCAAATGGGTCTTCCCGGAGTTGATCATACGTCGACGAGCTCCTCCGCCATGAGAATACCAGATCTGGGGATCTCCATGAACGACAATAACGGCGCCGTCAACAGCGGTGGAGGCGATGACGACGATGATAGAGATAACTGTGGCGATGAACCTAAGGAAGGAGCTGTTGAAGTCCCTACGCGCCGCCCCCGTGGCCGTCCGGCTGGCTCCAAGAATAAGCCTAAACCACCTATCTTTGTTACTAGGGATAGCCCTAATGCCCTAAAAAGCCATGTCATGGAGATTTCTAACGGAGCTGATATCGCTGAAAGTGTCGCTCACTTTGCTCGTCGGCGACAAAGAGGGGTTTCTGTGCTTAGTGGCAGCGGCACAGTGACGAACGTCACACTCCGGCAACCGTCTGCGCCCGGTGCAGTCTTAACCCTTCAAGGGCGGTTCGAGATTCTCTCGTTGACTGGAACTTTCCTCCCTGGACCAGCCCCACCTGGCTCGACCGGACTCACGATCTACTTAGCCGGTGGCCAAGGACAGGTGGTGGGCGGTAGCGTTGTCGGGCCACTCACCGCTGCCGGGCCAGTGATGGTGATCGCCGCAACATTTTCGAACGCGACATACGAAAGATTACCTTTAGAGGAGGAGGAAGAAGGCGGGGGAGGAGCACAAGGGCATACATCAGCAGGCGGTGGCACCGGCGACGGTTCGCCGCAAGGAATCGGAGGAGGAGTCGGAGATCTGTCAGCTATGCCACCACTCTACAATTTACCACCAAATTTGCTACCAAATGGCGGCGGCGGGGGCGGCGGACAAATGAACCAGGAGGCTTATTCATGGGCTCACGGCGGCCGACCATCGTTTTAA | 885 | 56.84 | MANRWWTSSQMGLPGVDHTSTSSSAMRIPDLGISMNDNNGAVNSGGGDDDDDRDNCGDEPKEGAVEVPTRRPRGRPAGSKNKPKPPIFVTRDSPNALKSHVMEISNGADIAESVAHFARRRQRGVSVLSGSGTVTNVTLRQPSAPGAVLTLQGRFEILSLTGTFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGPLTAAGPVMVIAATFSNATYERLPLEEEEEGGGGAQGHTSAGGGTGDGSPQGIGGGVGDLSAMPPLYNLPPNLLPNGGGGGGGQMNQEAYSWAHGGRPSF | 294 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 9430823 | 9432298 | + | CmaCh05G012270.1 | Cma05g01227 | 295345 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma05g01227 | 294 | PIRSF | ESCAROLA | 11 | 294 | IPR014476 | GO:0003680 | |
Cma05g01227 | 294 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 95 | 222 | - | - | |
Cma05g01227 | 294 | MobiDBLite | consensus disorder prediction | 1 | 94 | - | - | |
Cma05g01227 | 294 | MobiDBLite | consensus disorder prediction | 219 | 294 | - | - | |
Cma05g01227 | 294 | Gene3D | - | 98 | 224 | - | - | |
Cma05g01227 | 294 | ProSiteProfiles | PPC domain profile profile. | 94 | 232 | IPR005175 | - | |
Cma05g01227 | 294 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 7 | 293 | IPR014476 | GO:0003680 | |
Cma05g01227 | 294 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 | 7 | 293 | - | - | |
Cma05g01227 | 294 | CDD | DUF296 | 98 | 181 | IPR005175 | - | |
Cma05g01227 | 294 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Cma05g01227 | 294 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 99 | 211 | IPR005175 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g01227 | Cma-Chr5:9430823 | Cma06g01339 | Cma-Chr6:8796348 | 2.17E-92 | dispersed | |
Cma12g01143 | Cma-Chr12:9003109 | Cma05g01227 | Cma-Chr5:9430823 | 2.10E-130 | wgd | |
Cma14g01795 | Cma-Chr14:12942583 | Cma05g01227 | Cma-Chr5:9430823 | 2.60E-78 | wgd | |
Cma05g01227 | Cma-Chr5:9430823 | Cma08g01097 | Cma-Chr8:6829001 | 4.61E-70 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma05g01227 | - | - | csv:101220902 | 426.017 |