Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01227 ATGGCGAACCGTTGGTGGACTTCCAGCCAAATGGGTCTTCCCGGAGTTGATCATACGTCGACGAGCTCCTCCGCCATGAGAATACCAGATCTGGGGATCTCCATGAACGACAATAACGGCGCCGTCAACAGCGGTGGAGGCGATGACGACGATGATAGAGATAACTGTGGCGATGAACCTAAGGAAGGAGCTGTTGAAGTCCCTACGCGCCGCCCCCGTGGCCGTCCGGCTGGCTCCAAGAATAAGCCTAAACCACCTATCTTTGTTACTAGGGATAGCCCTAATGCCCTAAAAAGCCATGTCATGGAGATTTCTAACGGAGCTGATATCGCTGAAAGTGTCGCTCACTTTGCTCGTCGGCGACAAAGAGGGGTTTCTGTGCTTAGTGGCAGCGGCACAGTGACGAACGTCACACTCCGGCAACCGTCTGCGCCCGGTGCAGTCTTAACCCTTCAAGGGCGGTTCGAGATTCTCTCGTTGACTGGAACTTTCCTCCCTGGACCAGCCCCACCTGGCTCGACCGGACTCACGATCTACTTAGCCGGTGGCCAAGGACAGGTGGTGGGCGGTAGCGTTGTCGGGCCACTCACCGCTGCCGGGCCAGTGATGGTGATCGCCGCAACATTTTCGAACGCGACATACGAAAGATTACCTTTAGAGGAGGAGGAAGAAGGCGGGGGAGGAGCACAAGGGCATACATCAGCAGGCGGTGGCACCGGCGACGGTTCGCCGCAAGGAATCGGAGGAGGAGTCGGAGATCTGTCAGCTATGCCACCACTCTACAATTTACCACCAAATTTGCTACCAAATGGCGGCGGCGGGGGCGGCGGACAAATGAACCAGGAGGCTTATTCATGGGCTCACGGCGGCCGACCATCGTTTTAA 885 56.84 MANRWWTSSQMGLPGVDHTSTSSSAMRIPDLGISMNDNNGAVNSGGGDDDDDRDNCGDEPKEGAVEVPTRRPRGRPAGSKNKPKPPIFVTRDSPNALKSHVMEISNGADIAESVAHFARRRQRGVSVLSGSGTVTNVTLRQPSAPGAVLTLQGRFEILSLTGTFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGPLTAAGPVMVIAATFSNATYERLPLEEEEEGGGGAQGHTSAGGGTGDGSPQGIGGGVGDLSAMPPLYNLPPNLLPNGGGGGGGQMNQEAYSWAHGGRPSF 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9430823 9432298 + CmaCh05G012270.1 Cma05g01227 295345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01227 294 PIRSF ESCAROLA 11 294 IPR014476 GO:0003680
Cma05g01227 294 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 222 - -
Cma05g01227 294 MobiDBLite consensus disorder prediction 1 94 - -
Cma05g01227 294 MobiDBLite consensus disorder prediction 219 294 - -
Cma05g01227 294 Gene3D - 98 224 - -
Cma05g01227 294 ProSiteProfiles PPC domain profile profile. 94 232 IPR005175 -
Cma05g01227 294 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 293 IPR014476 GO:0003680
Cma05g01227 294 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 7 293 - -
Cma05g01227 294 CDD DUF296 98 181 IPR005175 -
Cma05g01227 294 MobiDBLite consensus disorder prediction 1 29 - -
Cma05g01227 294 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 211 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01227 Cma-Chr5:9430823 Cma06g01339 Cma-Chr6:8796348 2.17E-92 dispersed
Cma12g01143 Cma-Chr12:9003109 Cma05g01227 Cma-Chr5:9430823 2.10E-130 wgd
Cma14g01795 Cma-Chr14:12942583 Cma05g01227 Cma-Chr5:9430823 2.60E-78 wgd
Cma05g01227 Cma-Chr5:9430823 Cma08g01097 Cma-Chr8:6829001 4.61E-70 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01227 - - csv:101220902 426.017