Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01229 ATGGAACCCAATGAAAACCAGCTCAGCTCCTACTTCCACCACCAACACCACCATCAGAGTCCCACCACATCGCCGACCAATGGCCTATTACCCCCTACCCACCACCTCTCCTCCTCCGACGCCGGCCCCCACGTCGTTTACCCTCACTCCGTCCCCTCCGCCGCCGTGTCCTCCTCGCCTCTCGAGCCCGCCCGCCGTAAGAGAGGCCGGCCGAGGAAGTACGGTACGCCGGAGGAAGCTTTAGCGGCCAAGAAAGCTGCTACAGCGTCGTCTCACTCTTCGTCCTCCAAGGCTAAGAAGGACCTCGCTTCTTCTTCTTCCCTTAATGCCGTTTCCGCTTCTTCTTCCTTCTCCGCGTTTTCGAAGAAATCTCAGTTGGCTGCACTTGGTAATGCAGGCCAAGGTTTTTCGCCACATGTTATTAATGTAGCTGCTGGTGAGGATGTGGGTCAGAAAATTATGCTCTTTATGCAACAATGTAAGCGGGAAATTTGTATCCTTTCTGCATCTGGTTCGATCTCCAACGCATCTCTCCGTCAACCAGCGACATCTGGAGGCAATATTACATATGAGGGTCGTTTTGAGATTGTTTCATTATGCGGATCTTATATACGAACTGACTTCGGAGGAAAGACTGGTGGCCTTAGTGTATGTTTATCGAGTGCTGATGGCCATATAATAGGAGGGGGAGTCGGTGGACCGTTGAAGGCTGCTGGACCTGTGCAGGTCATTGTAGGTACCTTCGTAATCGACCCGAAGAAGGAAGTTGGTGGTGTTAAAGGTGATGCATCTACTGGAAAGTTGCCCTCGCCTACTGGTGGGACACCAATGTCAAATCTACGCTATGGCTCGACTGTCGACACGGGAGGTAATCAAGTCAGGGGAAATGATGAGCATCAAGGTATTGGGGAGAGTCATTTCCTGCTTCAGCCCCGGGGAGTGAACCTGACGTCGTTGCGATCTACAGACTGGAGGATGAGTCTGGATGCCACAAACAATGCTTATGATTTGACAGGAAGAACAAGCCATCATTCTCCCGAAAACGGAGATTACGATCAGATTCCCGATTGA 1071 51.63 MEPNENQLSSYFHHQHHHQSPTTSPTNGLLPPTHHLSSSDAGPHVVYPHSVPSAAVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKDLASSSSLNAVSASSSFSAFSKKSQLAALGNAGQGFSPHVINVAAGEDVGQKIMLFMQQCKREICILSASGSISNASLRQPATSGGNITYEGRFEIVSLCGSYIRTDFGGKTGGLSVCLSSADGHIIGGGVGGPLKAAGPVQVIVGTFVIDPKKEVGGVKGDASTGKLPSPTGGTPMSNLRYGSTVDTGGNQVRGNDEHQGIGESHFLLQPRGVNLTSLRSTDWRMSLDATNNAYDLTGRTSHHSPENGDYDQIPD 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9438060 9445055 - CmaCh05G012290.1 Cma05g01229 295347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01229 356 MobiDBLite consensus disorder prediction 1 104 - -
Cma05g01229 356 MobiDBLite consensus disorder prediction 259 280 - -
Cma05g01229 356 CDD DUF296 138 248 IPR005175 -
Cma05g01229 356 MobiDBLite consensus disorder prediction 335 356 - -
Cma05g01229 356 SUPERFAMILY AF0104/ALDC/Ptd012-like 135 249 - -
Cma05g01229 356 Pfam Plants and Prokaryotes Conserved (PCC) domain 138 249 IPR005175 -
Cma05g01229 356 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 14 1 346 - -
Cma05g01229 356 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 346 IPR039605 GO:0003680
Cma05g01229 356 ProSiteProfiles PPC domain profile profile. 132 272 IPR005175 -
Cma05g01229 356 MobiDBLite consensus disorder prediction 87 104 - -
Cma05g01229 356 MobiDBLite consensus disorder prediction 1 34 - -
Cma05g01229 356 Gene3D - 138 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01229 Cma-Chr5:9438060 Cma01g02039 Cma-Chr1:12986204 2.69E-54 dispersed
Cma12g01146 Cma-Chr12:9031493 Cma05g01229 Cma-Chr5:9438060 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01229 - - csv:101221844 535.798