Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01235 ATGGCGAATAAAGGCAGAGATGGTGAACACTCGAGTTTACTCGACGGGAAGTACGAATTCGGCCGTCTTTTAGGGCACGGGACCTTCGCTAAGGTTTACCATGCCCGGAATCTGCAAACGGGGAAGAGCGTTGCGATGAAAGTTGTTGGGAAGGAGAAGATCATCAAAATCGGCATGATGGAGCAGATCAAGAGAGAAATCTCTGTGATGAAAATGGTGAAGCATCCGAATATTGTGGAGCTTCATGAGGTGATGGCGAGTAAATCGAAGATCTATTTTGCGATGGAGCTTGTTAGAGGCGGTGAACTATTCTCCAAAATCGTGAAAGGTCGGTTGCGAGAGGATGTGGCTAGGGTTTACTTTCAGCAATTGATCTCTGCAATCGATTTCTGCCATAGCCGTGGTGTTTACCACCGCGATCTGAAACCGGAAAATCTGCTACTCGATCAGGACGGAAACCTTAAGGTCACCGATTTTGGCCTCACAGCCTTCTCGGAGCATTTGAAGCAAGACGGACTGCTGCACACGACATGCGGAACTCCGGCGTACGTTGCGCCGGAGGTTATGGGAAAGCAGGGATACGACGGGGCTAAGGCCGATCTCTGGTCCTGTGGAGTCATCCTGTACGTTCTTCTTGCCGGATACCTTCCATTCCAGGACGACAATATGGTGGCGATGTACCGGAAGATTTACAGAGGCGATTTCAGGTGTCCACCGTGGTTCTCTCCCGAAGCTCGCCGCCTAGTCACGAAGCTGCTAGATCCGAATCCGGTGACCAGAGTCGGTATCGCGAAGATCACATCGTCGTTATGGTTCAAGAAATCGGTACCGAAGACTGTGATTACGAAGGAGCAAGAAGAAATGGAGGAGAATTTGGCGAAATCGAATCAACCGGCGGAAACGTTGAACGCATTCCACATAATCTCTCTATCGGAAGGGTTTGATTTGTCGCCGTTGTTCGAAGAGAAGAAAAGGGAGGAGAAAGAGGAGATGAGATTCGCGACTTCATCTCCGGCGAGCAGTGTGATATCGAAGCTTGAGGAAGTGGCGAAGGCAGTGAAGTTCGATGTGAGGAAGAGCGAGTCGTGGGTTCGATTGCAGGGGCAAGAGAAGGGGAGAAAGGGGAAACTAGCGATTGCGGCGGATATCTTTGCTATGACGCCGTCGTTTGTGGTGGTGGAGGTGAAGAAGGACAACGGAGACACTTTAGAGTACAATCAATTCTGCAGGGAGGAGCTCCGGCCGGCATTGAAGGACATTGTTTGGACTTCTCCGACTGGGAGCTCGACCCCAGCTTGA 1299 50.81 MANKGRDGEHSSLLDGKYEFGRLLGHGTFAKVYHARNLQTGKSVAMKVVGKEKIIKIGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKIVKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDQDGNLKVTDFGLTAFSEHLKQDGLLHTTCGTPAYVAPEVMGKQGYDGAKADLWSCGVILYVLLAGYLPFQDDNMVAMYRKIYRGDFRCPPWFSPEARRLVTKLLDPNPVTRVGIAKITSSLWFKKSVPKTVITKEQEEMEENLAKSNQPAETLNAFHIISLSEGFDLSPLFEEKKREEKEEMRFATSSPASSVISKLEEVAKAVKFDVRKSESWVRLQGQEKGRKGKLAIAADIFAMTPSFVVVEVKKDNGDTLEYNQFCREELRPALKDIVWTSPTGSSTPA 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9485136 9486434 + CmaCh05G012350.1 Cma05g01235 295353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01235 432 Gene3D Transferase(Phosphotransferase) domain 1 103 299 - -
Cma05g01235 432 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 10 425 - -
Cma05g01235 432 PANTHER - 10 425 - -
Cma05g01235 432 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g01235 432 CDD CIPK_C 303 418 - -
Cma05g01235 432 Pfam NAF domain 300 359 IPR004041 GO:0007165
Cma05g01235 432 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g01235 432 Gene3D Phosphorylase Kinase; domain 1 12 102 - -
Cma05g01235 432 CDD STKc_SnRK3 17 271 - -
Cma05g01235 432 ProSiteProfiles NAF domain profile. 297 321 IPR018451 GO:0007165
Cma05g01235 432 SUPERFAMILY Protein kinase-like (PK-like) 15 285 IPR011009 -
Cma05g01235 432 Gene3D Kinase associated domain 1, KA1 300 423 - -
Cma05g01235 432 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524
Cma05g01235 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Cma05g01235 432 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01235 Cma-Chr5:9485136 Cma11g00469 Cma-Chr11:2275952 0 dispersed
Cma10g00478 Cma-Chr10:2169579 Cma05g01235 Cma-Chr5:9485136 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68597 PF00069 Pkinase 1.30E-70 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01235 - K07198 csv:101208458 782.711