Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma05g01236 | ATGGAAATAGCCAAAACTGCTCAGAAATCATGGGCAAAGACTCCATTGTGGAGGAGAGCTGAGGTTCTTCACAAATCTGCTGCGATTTTGAAAGAACACAAAGCCCCCATTGCTGAGTGCTTGGTGAAGGAAATTTCAAAGCCGGCCAAAGATGCAGTGACCGAGGTTGTGAGATCTGGAGATCTTGTTTCATATTGTGCTGAAGAAGATGTTAGGATCCTGGGAGAGGGGAAGTTCTTGGTTGCTGATAGTTTTCCTGGAAATGAAAGGACCAAATATTGCCTTACTTCCAAGCTGTACCTTCCAGTATGGCTACCTTGTTACGACTTCACTCTAGTCACTAGCCCTGCCTTCAGCATCCCCTCCTTACGGTTAAGTAATCCCACCTTCCATGGCTCCCTCACTCCTCTGTTTATTTCTCGCCGGACTGATATGAGACTCACCAACTCCCTCCCCGACCTTCATAGCCACCGCCGTAACCAGCCACCGGAGACGGACGACTCTCAACTCCACCACCACCTTCAGACTTCCCTCTTCCATCCACCTTCCTTCTCCTCTGATGATTTCCTCGACCAAATCCTCTCCACCGCTCCCCCTCCCTGGGAACTCCCCGTCGGACTTCCAAATCCCCACTCAAACCTCCCTCCCCAGCCACCGCCGCCATCTAATCCCGACAATGGCGCGTTTCAGATCGGCGACGCAACTCCAGCGGGCAAAATGGCCATGGCCTTGCTTCAACAGCAGTTACTCATGTCGAGAGGAATCGCCACCGTCTCCGATGTTTCCAGTCTCCTTCCAATGCTTAGTAACGACGTCGTTGAAGTCGAAGGCTCTTCGTCCTTCAAATGCCCTAATCCGATTAACCACGGCTCTGTCATTCCCTCTATCTTCAACGAATTCACCGGGTTTCTGAACGCCTCTGGTTCCAGCCAGAACCAGAATCAATTTCAGGCAGGAAATTCAAATTCACAGAAACAGAACTTCATAGCTCCGGTATCAATCAATCCTCCACCTCCGTCTGTCCCTGGCTCCGGCGGTGGTGCTGCAACATCAGCTCAGCCCCGGCAGAGAGTCAGAGCTCGGAGAGGACAAGCCACAGATCCTCACAGTATAGCGGAAAGATTACGAAGAGAACGAATTGCAGAGAGAATGAAAGGTCTGCAAGAACTGGTTCCCAACGCTAACAAGACAGACAAGGCTTCAATGCTGGATGAGATCATAGACTACGTAAAGTTCCTTCAGCTTCAAGTCAAAGTTCTGAGCGTCAGCAGGTTGGGCGGTGCCACCGCCGCCATGCCTTCCCTTCTACCCGATTCTTCCACTCAGACCTCTGCCGGAGCTCCGACGAGTAACGACGCAATGGCGATAACGGAGAACCAGGTTGTGAAGTTAATGGAGGAGGACATGGGCTCCGCCATGCAGTACTTACAAGGCAAAGGCCTCTGCCTCATGCCCATCTCTCTCGCCACCGCTATCTCTGCTGCCACGTGTCACAGCCGCCCCATCACGACATCGAAGGGCGGAGGAGATGCCCCCACTTCTCCCAGCCTCTCGGCGTTGACCAGTCAGTCAACCGTCTTAGGTAACGGCACCGTCGACAGAGCGGTCAGAGACTCTGCCTCCGTTTCGCGGCCGTGA | 1638 | 52.93 | MEIAKTAQKSWAKTPLWRRAEVLHKSAAILKEHKAPIAECLVKEISKPAKDAVTEVVRSGDLVSYCAEEDVRILGEGKFLVADSFPGNERTKYCLTSKLYLPVWLPCYDFTLVTSPAFSIPSLRLSNPTFHGSLTPLFISRRTDMRLTNSLPDLHSHRRNQPPETDDSQLHHHLQTSLFHPPSFSSDDFLDQILSTAPPPWELPVGLPNPHSNLPPQPPPPSNPDNGAFQIGDATPAGKMAMALLQQQLLMSRGIATVSDVSSLLPMLSNDVVEVEGSSSFKCPNPINHGSVIPSIFNEFTGFLNASGSSQNQNQFQAGNSNSQKQNFIAPVSINPPPPSVPGSGGGAATSAQPRQRVRARRGQATDPHSIAERLRRERIAERMKGLQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSVSRLGGATAAMPSLLPDSSTQTSAGAPTSNDAMAITENQVVKLMEEDMGSAMQYLQGKGLCLMPISLATAISAATCHSRPITTSKGGGDAPTSPSLSALTSQSTVLGNGTVDRAVRDSASVSRP | 545 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 9494722 | 9503396 | - | CmaCh05G012360.1 | Cma05g01236 | 295354 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma05g01236 | 545 | Gene3D | - | 359 | 420 | IPR036638 | GO:0046983 | |
| Cma05g01236 | 545 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 364 | 413 | IPR011598 | GO:0046983 | |
| Cma05g01236 | 545 | MobiDBLite | consensus disorder prediction | 328 | 368 | - | - | |
| Cma05g01236 | 545 | Pfam | Helix-loop-helix DNA-binding domain | 369 | 414 | IPR011598 | GO:0046983 | |
| Cma05g01236 | 545 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 1 | 96 | IPR016162 | GO:0016491 | |
| Cma05g01236 | 545 | MobiDBLite | consensus disorder prediction | 503 | 530 | - | - | |
| Cma05g01236 | 545 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 362 | 422 | IPR036638 | GO:0046983 | |
| Cma05g01236 | 545 | Pfam | Aldehyde dehydrogenase family | 2 | 76 | IPR015590 | GO:0016491 | |
| Cma05g01236 | 545 | MobiDBLite | consensus disorder prediction | 503 | 545 | - | - | |
| Cma05g01236 | 545 | PANTHER | TRANSCRIPTION FACTOR BHLH69 | 180 | 506 | - | - | |
| Cma05g01236 | 545 | AntiFam | Antisense to 16S rRNA | 101 | 129 | - | - | |
| Cma05g01236 | 545 | MobiDBLite | consensus disorder prediction | 201 | 233 | - | - | |
| Cma05g01236 | 545 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 180 | 506 | - | - | |
| Cma05g01236 | 545 | SMART | finulus | 370 | 419 | IPR011598 | GO:0046983 | |
| Cma05g01236 | 545 | MobiDBLite | consensus disorder prediction | 152 | 172 | - | - | |
| Cma05g01236 | 545 | MobiDBLite | consensus disorder prediction | 201 | 225 | - | - | |
| Cma05g01236 | 545 | SUPERFAMILY | ALDH-like | 2 | 80 | IPR016161 | GO:0016491 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma05g01236 | Cma10g00480 | CCT | |
| Cma05g01236 | Cma11g00473 | CCT | |
| Cma05g01236 | Cma12g01153 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma05g01236 | Cma-Chr5:9494722 | Cma11g00473 | Cma-Chr11:2294679 | 1.93E-95 | dispersed | |
| Cma02g01806 | Cma-Chr2:10045686 | Cma05g01236 | Cma-Chr5:9494722 | 3.16E-22 | transposed | |
| Cma10g01089 | Cma-Chr10:7200892 | Cma05g01236 | Cma-Chr5:9494722 | 2.63E-06 | transposed | |
| Cma12g00611 | Cma-Chr12:3205816 | Cma05g01236 | Cma-Chr5:9494722 | 4.34E-06 | transposed | |
| Cma10g00480 | Cma-Chr10:2188836 | Cma05g01236 | Cma-Chr5:9494722 | 4.98E-96 | wgd | |
| Cma12g01153 | Cma-Chr12:9092596 | Cma05g01236 | Cma-Chr5:9494722 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 35106 | PF00171 | Aldedh | 1.30E-12 | CL0099 | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma05g01236 | - | - | csv:101222794 | 550.436 |