Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01236 ATGGAAATAGCCAAAACTGCTCAGAAATCATGGGCAAAGACTCCATTGTGGAGGAGAGCTGAGGTTCTTCACAAATCTGCTGCGATTTTGAAAGAACACAAAGCCCCCATTGCTGAGTGCTTGGTGAAGGAAATTTCAAAGCCGGCCAAAGATGCAGTGACCGAGGTTGTGAGATCTGGAGATCTTGTTTCATATTGTGCTGAAGAAGATGTTAGGATCCTGGGAGAGGGGAAGTTCTTGGTTGCTGATAGTTTTCCTGGAAATGAAAGGACCAAATATTGCCTTACTTCCAAGCTGTACCTTCCAGTATGGCTACCTTGTTACGACTTCACTCTAGTCACTAGCCCTGCCTTCAGCATCCCCTCCTTACGGTTAAGTAATCCCACCTTCCATGGCTCCCTCACTCCTCTGTTTATTTCTCGCCGGACTGATATGAGACTCACCAACTCCCTCCCCGACCTTCATAGCCACCGCCGTAACCAGCCACCGGAGACGGACGACTCTCAACTCCACCACCACCTTCAGACTTCCCTCTTCCATCCACCTTCCTTCTCCTCTGATGATTTCCTCGACCAAATCCTCTCCACCGCTCCCCCTCCCTGGGAACTCCCCGTCGGACTTCCAAATCCCCACTCAAACCTCCCTCCCCAGCCACCGCCGCCATCTAATCCCGACAATGGCGCGTTTCAGATCGGCGACGCAACTCCAGCGGGCAAAATGGCCATGGCCTTGCTTCAACAGCAGTTACTCATGTCGAGAGGAATCGCCACCGTCTCCGATGTTTCCAGTCTCCTTCCAATGCTTAGTAACGACGTCGTTGAAGTCGAAGGCTCTTCGTCCTTCAAATGCCCTAATCCGATTAACCACGGCTCTGTCATTCCCTCTATCTTCAACGAATTCACCGGGTTTCTGAACGCCTCTGGTTCCAGCCAGAACCAGAATCAATTTCAGGCAGGAAATTCAAATTCACAGAAACAGAACTTCATAGCTCCGGTATCAATCAATCCTCCACCTCCGTCTGTCCCTGGCTCCGGCGGTGGTGCTGCAACATCAGCTCAGCCCCGGCAGAGAGTCAGAGCTCGGAGAGGACAAGCCACAGATCCTCACAGTATAGCGGAAAGATTACGAAGAGAACGAATTGCAGAGAGAATGAAAGGTCTGCAAGAACTGGTTCCCAACGCTAACAAGACAGACAAGGCTTCAATGCTGGATGAGATCATAGACTACGTAAAGTTCCTTCAGCTTCAAGTCAAAGTTCTGAGCGTCAGCAGGTTGGGCGGTGCCACCGCCGCCATGCCTTCCCTTCTACCCGATTCTTCCACTCAGACCTCTGCCGGAGCTCCGACGAGTAACGACGCAATGGCGATAACGGAGAACCAGGTTGTGAAGTTAATGGAGGAGGACATGGGCTCCGCCATGCAGTACTTACAAGGCAAAGGCCTCTGCCTCATGCCCATCTCTCTCGCCACCGCTATCTCTGCTGCCACGTGTCACAGCCGCCCCATCACGACATCGAAGGGCGGAGGAGATGCCCCCACTTCTCCCAGCCTCTCGGCGTTGACCAGTCAGTCAACCGTCTTAGGTAACGGCACCGTCGACAGAGCGGTCAGAGACTCTGCCTCCGTTTCGCGGCCGTGA 1638 52.93 MEIAKTAQKSWAKTPLWRRAEVLHKSAAILKEHKAPIAECLVKEISKPAKDAVTEVVRSGDLVSYCAEEDVRILGEGKFLVADSFPGNERTKYCLTSKLYLPVWLPCYDFTLVTSPAFSIPSLRLSNPTFHGSLTPLFISRRTDMRLTNSLPDLHSHRRNQPPETDDSQLHHHLQTSLFHPPSFSSDDFLDQILSTAPPPWELPVGLPNPHSNLPPQPPPPSNPDNGAFQIGDATPAGKMAMALLQQQLLMSRGIATVSDVSSLLPMLSNDVVEVEGSSSFKCPNPINHGSVIPSIFNEFTGFLNASGSSQNQNQFQAGNSNSQKQNFIAPVSINPPPPSVPGSGGGAATSAQPRQRVRARRGQATDPHSIAERLRRERIAERMKGLQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSVSRLGGATAAMPSLLPDSSTQTSAGAPTSNDAMAITENQVVKLMEEDMGSAMQYLQGKGLCLMPISLATAISAATCHSRPITTSKGGGDAPTSPSLSALTSQSTVLGNGTVDRAVRDSASVSRP 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9494722 9503396 - CmaCh05G012360.1 Cma05g01236 295354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01236 545 Gene3D - 359 420 IPR036638 GO:0046983
Cma05g01236 545 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 364 413 IPR011598 GO:0046983
Cma05g01236 545 MobiDBLite consensus disorder prediction 328 368 - -
Cma05g01236 545 Pfam Helix-loop-helix DNA-binding domain 369 414 IPR011598 GO:0046983
Cma05g01236 545 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 1 96 IPR016162 GO:0016491
Cma05g01236 545 MobiDBLite consensus disorder prediction 503 530 - -
Cma05g01236 545 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 362 422 IPR036638 GO:0046983
Cma05g01236 545 Pfam Aldehyde dehydrogenase family 2 76 IPR015590 GO:0016491
Cma05g01236 545 MobiDBLite consensus disorder prediction 503 545 - -
Cma05g01236 545 PANTHER TRANSCRIPTION FACTOR BHLH69 180 506 - -
Cma05g01236 545 AntiFam Antisense to 16S rRNA 101 129 - -
Cma05g01236 545 MobiDBLite consensus disorder prediction 201 233 - -
Cma05g01236 545 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 180 506 - -
Cma05g01236 545 SMART finulus 370 419 IPR011598 GO:0046983
Cma05g01236 545 MobiDBLite consensus disorder prediction 152 172 - -
Cma05g01236 545 MobiDBLite consensus disorder prediction 201 225 - -
Cma05g01236 545 SUPERFAMILY ALDH-like 2 80 IPR016161 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01236 - - - csv:101222794 550.436
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g01236 Cma10g00480 CCT
Cma05g01236 Cma11g00473 CCT
Cma05g01236 Cma12g01153 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01236 Cma-Chr5:9494722 Cma11g00473 Cma-Chr11:2294679 1.93E-95 dispersed
Cma02g01806 Cma-Chr2:10045686 Cma05g01236 Cma-Chr5:9494722 3.16E-22 transposed
Cma10g01089 Cma-Chr10:7200892 Cma05g01236 Cma-Chr5:9494722 2.63E-06 transposed
Cma12g00611 Cma-Chr12:3205816 Cma05g01236 Cma-Chr5:9494722 4.34E-06 transposed
Cma10g00480 Cma-Chr10:2188836 Cma05g01236 Cma-Chr5:9494722 4.98E-96 wgd
Cma12g01153 Cma-Chr12:9092596 Cma05g01236 Cma-Chr5:9494722 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g658 Blo01g00628 . Bda01g01945 . Bpe01g00640 Bpe02g02124 . . Cmo10g00511 Cmo11g00470 Cma05g01236 Cma12g01153 . Car12g01123 Sed08g1570 . . Bhi02g00893 Tan09g1547 Cmetu05g1643 . Hepe09g0590 . . . . . . . . . . . . Cone7ag0587 . Csa02g00267 . Cme02g01076 . . . . . . Bma01g00324 . . Cmo05g01263 Cmo12g01174 Cma10g00480 Cma11g00473 Car10g00442 . Cpe11g01019 Cpe07g01154 Bhi06g01808 . . . . . . Cla06g01221 Cam06g1362 Cec06g1407 Cco06g1413 Clacu06g1311 Cmu06g1282 Cre06g2093 Lsi11g00401 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma10g00604 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 71.0 2.9e-212 735.3
Cma11g00601 . 6 501 Aldehyde Dehydrogenase Gene Family AT3G24503 69.5 2.3e-209 725.7
Cma12g00001 . 34 535 Aldehyde Dehydrogenase Gene Family AT3G24503 53.9 4.8e-159 558.5
Cma05g00003 . 34 562 Aldehyde Dehydrogenase Gene Family AT3G24503 51.9 4.5e-157 552.0
Cma11g00104 . 62 546 Aldehyde Dehydrogenase Gene Family AT3G24503 54.3 9.4e-155 544.3
Cma11g00104 . 1 546 Aldehyde Dehydrogenase Gene Family AT3G48000 78.9 9.1e-257 883.2
Cma12g00001 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 77.0 4.8e-250 860.9
Cma05g00003 . 1 562 Aldehyde Dehydrogenase Gene Family AT3G48000 72.0 1.3e-242 836.3
Cma10g00604 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 55.9 1.0e-162 570.9
Cma11g00601 . 17 501 Aldehyde Dehydrogenase Gene Family AT3G48000 53.6 2.0e-158 556.6
Cma12g00001 . 1 379 Aldehyde Dehydrogenase Gene Family AT1G23800 76.6 3.2e-169 592.0
Cma11g00104 . 1 390 Aldehyde Dehydrogenase Gene Family AT1G23800 73.3 1.7e-167 586.3
Cma05g00003 . 1 406 Aldehyde Dehydrogenase Gene Family AT1G23800 71.4 2.4e-164 575.9
Cma10g00604 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 55.6 8.0e-104 374.8
Cma11g00601 . 17 345 Aldehyde Dehydrogenase Gene Family AT1G23800 54.1 4.4e-102 369.0
Cma09g00785 CST 7 482 Aldehyde Dehydrogenase Gene Family AT4G34240 62.6 3.4e-179 625.5
Cma01g01383 CST 16 489 Aldehyde Dehydrogenase Gene Family AT4G34240 64.6 4.5e-179 625.2
Cma09g00784 . 3 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.3 3.2e-177 619.0
Cma01g01383 CST 77 487 Aldehyde Dehydrogenase Gene Family AT1G44170 71.8 5.1e-178 621.3
Cma09g00784 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.3 3.1e-175 612.1
Cma09g00785 CST 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 71.0 4.9e-173 604.7
Cma02g01246 . 59 475 Aldehyde Dehydrogenase Gene Family AT1G44170 52.0 7.0e-119 424.9
Cma02g01246 . 5 477 Aldehyde Dehydrogenase Gene Family AT4G36250 55.4 8.2e-156 547.7
Cma16g00646 . 5 401 Aldehyde Dehydrogenase Gene Family AT4G36250 60.2 1.8e-147 520.0
Cma20g00289 . 39 571 Aldehyde Dehydrogenase Gene Family AT1G79440 72.4 5.3e-225 777.7
Cma02g00667 . 33 540 Aldehyde Dehydrogenase Gene Family AT1G79440 72.4 7.2e-222 767.3
Cma11g01675 . 12 506 Aldehyde Dehydrogenase Gene Family AT2G14170 83.5 7.0e-242 833.9
Cma03g00850 . 212 612 Aldehyde Dehydrogenase Gene Family AT2G14170 66.1 2.8e-158 556.2
Cma10g00151 . 1 496 Aldehyde Dehydrogenase Gene Family AT1G74920 80.8 1.6e-247 852.4
Cma10g00151 . 1 496 Aldehyde Dehydrogenase Gene Family AT3G48170 81.3 2.0e-250 862.1
Cma12g01154 . 1 501 Aldehyde Dehydrogenase Gene Family AT2G24270 89.2 5.3e-267 917.1
Cma05g01236 CCT,CST 1 119 Aldehyde Dehydrogenase Gene Family AT2G24270 73.9 6.7e-44 176.0
Cma13g00931 . 32 554 Aldehyde Dehydrogenase Gene Family AT5G62530 80.2 6.3e-261 897.1
Cma17g00366 CST 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 77.0 3.9e-277 951.0
Cma08g01274 CST 1 560 Aldehyde Dehydrogenase Gene Family AT3G66658 69.4 1.0e-248 856.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010773 0 2 0 0 0 1 2 1 1 1 1 1 2 2 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 0 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35106 PF00171 Aldedh 1.30E-12 CL0099 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g01236 Cma_Chr05 FPKM 14.148434 17.759705 6.388527 6.230368 5.608935 6.614168 4.457779 17.892843 19.143419 16.667736