Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01243 ATGTGTGTGACGGATGCAGAGCAGGTTGGGACTGAGAGGCCAAATTCTGGGGTTAATAATACCATGCCTTGGCCGTTGCATTGTGATTTTTTACAGAATCAGATGGGGAATCCTGATAAGCAGCCTGCTCTCATTGGAACTAGCGATCGAACCCGCTCTGGGAATTCTTTTCCTCTCGAAAGCATTTCCGAGGATGCTGCATTTATAGATCGGAAAGACAACCCATCTACTTTTGTTCTGGCACTTAGATCAGGAGAATGGTCTGATATCGGAAAGCGTCCTTATATGGAGGACACTCATGTATGCATTCATGACATGGCTAAGAAGTTCGGCTGTAGTTTTCTCAACGAGGAAGCTGTCTCCTTCTACGGGGTATTTGATGGTCATGGAGGAAAAGGCGCCGCACAATTTGTTCGTGACCACTTGCCGAGAGTCATTGTTGAAGATTCCGACTTTCCTTTAGAGCTCGAAAAGGTGGTTACGAGATCATTTATGGAGACTGATGCAGCTTTTGCTAGATCTTGCACTCTTGAAACATCTCTGTCTTCTGGCACAACTGCACTGACTGCAATGATATTTGGAAGGTCTTTGCTCGTAGCAAACGCTGGCGATTGCCGAGCAGTACTGTCAAGACAAGGACGTGCAATAGAAATGTCAAAAGACCACAGGCCATGCTGCACAAAAGAAAGAAAGCGAGTCGAGGCCTTGGGTGGATTCATTGATGACGATTATCTAAACGGCCTGCTCGGGGTTACACGTGCTATAGGAGATTGGCATCTTGAAGGAATGAAGGAAATAAGTGAAAAAGGTGGACCATTAAGTGCCGAACCAGAACTAAGATTAATGACATTGACAAAAGAGCACGAGTTCTTGATCATCGGTAGTGATGGAATATGGGACGTCTTCACGAGCCAGAACGCTGTCGATTTTGCTCGGAGGAGGCTCCAAGAGCACAATGATGCAAAAGTTTGCTGCAAGGAAATAGTAGAGGAAGCCATAAAGAGAGGAGCAACAGACAATTTAACAGTAGTCTTGGTTAGCTTTCACTTGGAGCCTCCACCACCTGTAGTTTTTCAGAGGCCAAGATTTAGAAGAAGCATATCTGCAGAGGCACTTCAGAACCTCAAATTTCATCTAGAAGGATAG 1146 45.38 MCVTDAEQVGTERPNSGVNNTMPWPLHCDFLQNQMGNPDKQPALIGTSDRTRSGNSFPLESISEDAAFIDRKDNPSTFVLALRSGEWSDIGKRPYMEDTHVCIHDMAKKFGCSFLNEEAVSFYGVFDGHGGKGAAQFVRDHLPRVIVEDSDFPLELEKVVTRSFMETDAAFARSCTLETSLSSGTTALTAMIFGRSLLVANAGDCRAVLSRQGRAIEMSKDHRPCCTKERKRVEALGGFIDDDYLNGLLGVTRAIGDWHLEGMKEISEKGGPLSAEPELRLMTLTKEHEFLIIGSDGIWDVFTSQNAVDFARRRLQEHNDAKVCCKEIVEEAIKRGATDNLTVVLVSFHLEPPPPVVFQRPRFRRSISAEALQNLKFHLEG 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9542146 9548026 + CmaCh05G012430.1 Cma05g01243 295361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01243 381 SMART PP2C_4 73 346 IPR001932 -
Cma05g01243 381 Gene3D - 69 351 IPR036457 -
Cma05g01243 381 Pfam Protein phosphatase 2C 95 340 IPR001932 -
Cma05g01243 381 SUPERFAMILY PP2C-like 74 349 IPR036457 -
Cma05g01243 381 ProSitePatterns PPM-type phosphatase domain signature. 122 130 IPR000222 GO:0043169
Cma05g01243 381 PANTHER PROTEIN PHOSPHATASE 2C 1 369 IPR015655 GO:0004722|GO:0006470
Cma05g01243 381 ProSiteProfiles PPM-type phosphatase domain profile. 83 348 IPR001932 -
Cma05g01243 381 CDD PP2Cc 83 348 IPR001932 -
Cma05g01243 381 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 369 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02027 Cma-Chr1:12939420 Cma05g01243 Cma-Chr5:9542146 3.36E-107 dispersed
Cma05g01243 Cma-Chr5:9542146 Cma09g00041 Cma-Chr9:172537 6.57E-109 dispersed
Cma08g00588 Cma-Chr8:3350272 Cma05g01243 Cma-Chr5:9542146 6.28E-39 dispersed
Cma12g01161 Cma-Chr12:9161099 Cma05g01243 Cma-Chr5:9542146 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35108 PF00481 PP2C 9.00E-68 CL0238 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01243 K14803 - csv:101210349 696.041