Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma05g01287 | ATGTCAAGCTGCATCAACAGTGCACAAGAGCAGCTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGCAATATCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAACCTCTGGTCTGTGAACATGGCTGCAGCTTTCCAATCTCTCTCATGGCAGAATTCTCAGGCATCAAACCACACCCACAGTGGGCTTGCAGCTGATCATTACAGAGCTGAATTGGGTTCATCATCAAAATGCAACAACAAAATGAAGATGAGAGCTCCAATTAGAAACCCTACAAATGATGATCAAAGGATCATCAATCGAGCTCCCGAGAAGAAGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAGGAAATCCAGAGGATCAAAGCAAATAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGCCTCATGCTGGAAACCAACAATCTCCAGACTAAGACGAAGAGCGATGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGA | 582 | 44.5 | MSSCINSAQEQLCYIPCNFCNIVLAVSVPCSNIFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHTHSGLAADHYRAELGSSSKCNNKMKMRAPIRNPTNDDQRIINRAPEKKQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGLMLETNNLQTKTKSDGSEKHLMSVPGLHY | 193 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 9820965 | 9824076 | + | CmaCh05G012870.1 | Cma05g01287 | 295405 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma05g01287 | 193 | PANTHER | PROTEIN YABBY 6-RELATED | 1 | 178 | IPR006780 | GO:0007275 | |
| Cma05g01287 | 193 | Pfam | YABBY protein | 8 | 165 | IPR006780 | GO:0007275 | |
| Cma05g01287 | 193 | Gene3D | High mobility group box domain | 103 | 161 | IPR036910 | - | |
| Cma05g01287 | 193 | SUPERFAMILY | HMG-box | 105 | 158 | IPR036910 | - | |
| Cma05g01287 | 193 | PANTHER | AXIAL REGULATOR YABBY 5 | 1 | 178 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma02g01297 | Cma-Chr2:7630829 | Cma05g01287 | Cma-Chr5:9820965 | 5.78E-61 | dispersed | |
| Cma05g01287 | Cma-Chr5:9820965 | Cma15g01149 | Cma-Chr15:7308199 | 7.74E-54 | dispersed | |
| Cma10g00541 | Cma-Chr10:2483897 | Cma05g01287 | Cma-Chr5:9820965 | 1.82E-80 | wgd | |
| Cma11g00536 | Cma-Chr11:2583470 | Cma05g01287 | Cma-Chr5:9820965 | 1.27E-93 | wgd | |
| Cma12g01202 | Cma-Chr12:9427635 | Cma05g01287 | Cma-Chr5:9820965 | 4.65E-121 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 35110 | PF04690 | YABBY | 1.50E-69 | CL0114 | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma05g01287 | K25796 | - | csv:101219877 | 362.844 |