Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma05g01293 | ATGGCGCCATCAAAGAAGTTTAGAGGCGTTAGGCAACGACACTGGGGATCTTGGGTCTCCGAAATTCGCCACCCTCTTCTGAAGAGAAGGGTTTGGTTGGGGACGTTCGAGACGGCGGAGGAGGCAGCGAGAGCGTACGATCAGGCCGCCGTGTTAATGAGCGGTCGAAACGCAAAAACCAACTTTCCGATGAGCGAAACGGCGGCGCCAGAATTAGAAAAACTCAACAACATCACTACTCCATCTTCAACAAAGGGCTTATCAGAGATCCTCCACGCCAAGCTTCGAAAATGCAGCAAAGCGCCGTCGCCATCAATGACGTGTCTCCGACTCGACACTGAAAATTCCCACATCGGCGTTTGGCAAAAACGCGCCGGCCAACGCTCTGACTCAAGCTGGGTCATGACGGTTCATTTGGGAAAAGAAAACTCCTCCTCCTCCACCGCCGCCGCTTACGGCGGCAATGACGACGGTGGGCGGTTGTGGAATAGTAAAAAAAGTGGTGGCGCTTCAATGGCGGGCGGTGGACCCCACATGAGGAATTTGCAGATGGATGAAGAAGAAAGAATTGCATTGCAAATGATTGAGGAGTTGCTGAGCAGAAATTATGGTAACCCATCTGAAATTCAAGTTCAAGATCATCAAGAGGAAGCAAAGCTAAGCCCTTTCTAA | 672 | 51.19 | MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNFPMSETAAPELEKLNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGVWQKRAGQRSDSSWVMTVHLGKENSSSSTAAAYGGNDDGGRLWNSKKSGGASMAGGGPHMRNLQMDEEERIALQMIEELLSRNYGNPSEIQVQDHQEEAKLSPF | 223 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 9852901 | 9854627 | + | CmaCh05G012930.1 | Cma05g01293 | 295411 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma05g01293 | 223 | SUPERFAMILY | DNA-binding domain | 6 | 65 | IPR016177 | GO:0003677 | |
Cma05g01293 | 223 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 1 | 208 | - | - | |
Cma05g01293 | 223 | Pfam | AP2 domain | 6 | 50 | IPR001471 | GO:0003700|GO:0006355 | |
Cma05g01293 | 223 | Gene3D | AP2/ERF domain | 5 | 65 | IPR036955 | GO:0003700|GO:0006355 | |
Cma05g01293 | 223 | PRINTS | Ethylene responsive element binding protein signature | 7 | 18 | IPR001471 | GO:0003700|GO:0006355 | |
Cma05g01293 | 223 | PRINTS | Ethylene responsive element binding protein signature | 29 | 45 | IPR001471 | GO:0003700|GO:0006355 | |
Cma05g01293 | 223 | ProSiteProfiles | AP2/ERF domain profile. | 6 | 63 | IPR001471 | GO:0003700|GO:0006355 | |
Cma05g01293 | 223 | CDD | AP2 | 5 | 65 | IPR001471 | GO:0003700|GO:0006355 | |
Cma05g01293 | 223 | PANTHER | AP2-EREBP TRANSCRIPTION FACTOR | 1 | 208 | - | - | |
Cma05g01293 | 223 | SMART | rav1_2 | 6 | 69 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma05g01293 | Cma11g00547 | CCT | |
Cma05g01293 | Cma11g00547 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g01293 | Cma-Chr5:9852901 | Cma09g00461 | Cma-Chr9:2028621 | 9.11E-74 | dispersed | |
Cma12g00356 | Cma-Chr12:1805054 | Cma05g01293 | Cma-Chr5:9852901 | 3.96E-33 | dispersed | |
Cma01g01502 | Cma-Chr1:10548202 | Cma05g01293 | Cma-Chr5:9852901 | 1.02E-72 | wgd | |
Cma11g00547 | Cma-Chr11:2624261 | Cma05g01293 | Cma-Chr5:9852901 | 4.50E-81 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35111 | PF00847 | AP2 | 3.00E-12 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma05g01293 | - | - | bhj:120080144 | 329.331 |