Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01293 ATGGCGCCATCAAAGAAGTTTAGAGGCGTTAGGCAACGACACTGGGGATCTTGGGTCTCCGAAATTCGCCACCCTCTTCTGAAGAGAAGGGTTTGGTTGGGGACGTTCGAGACGGCGGAGGAGGCAGCGAGAGCGTACGATCAGGCCGCCGTGTTAATGAGCGGTCGAAACGCAAAAACCAACTTTCCGATGAGCGAAACGGCGGCGCCAGAATTAGAAAAACTCAACAACATCACTACTCCATCTTCAACAAAGGGCTTATCAGAGATCCTCCACGCCAAGCTTCGAAAATGCAGCAAAGCGCCGTCGCCATCAATGACGTGTCTCCGACTCGACACTGAAAATTCCCACATCGGCGTTTGGCAAAAACGCGCCGGCCAACGCTCTGACTCAAGCTGGGTCATGACGGTTCATTTGGGAAAAGAAAACTCCTCCTCCTCCACCGCCGCCGCTTACGGCGGCAATGACGACGGTGGGCGGTTGTGGAATAGTAAAAAAAGTGGTGGCGCTTCAATGGCGGGCGGTGGACCCCACATGAGGAATTTGCAGATGGATGAAGAAGAAAGAATTGCATTGCAAATGATTGAGGAGTTGCTGAGCAGAAATTATGGTAACCCATCTGAAATTCAAGTTCAAGATCATCAAGAGGAAGCAAAGCTAAGCCCTTTCTAA 672 51.19 MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNFPMSETAAPELEKLNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGVWQKRAGQRSDSSWVMTVHLGKENSSSSTAAAYGGNDDGGRLWNSKKSGGASMAGGGPHMRNLQMDEEERIALQMIEELLSRNYGNPSEIQVQDHQEEAKLSPF 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9852901 9854627 + CmaCh05G012930.1 Cma05g01293 295411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01293 223 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Cma05g01293 223 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 208 - -
Cma05g01293 223 Pfam AP2 domain 6 50 IPR001471 GO:0003700|GO:0006355
Cma05g01293 223 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Cma05g01293 223 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Cma05g01293 223 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Cma05g01293 223 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Cma05g01293 223 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Cma05g01293 223 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 208 - -
Cma05g01293 223 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g01293 Cma11g00547 CCT
Cma05g01293 Cma11g00547 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01293 Cma-Chr5:9852901 Cma09g00461 Cma-Chr9:2028621 9.11E-74 dispersed
Cma12g00356 Cma-Chr12:1805054 Cma05g01293 Cma-Chr5:9852901 3.96E-33 dispersed
Cma01g01502 Cma-Chr1:10548202 Cma05g01293 Cma-Chr5:9852901 1.02E-72 wgd
Cma11g00547 Cma-Chr11:2624261 Cma05g01293 Cma-Chr5:9852901 4.50E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35111 PF00847 AP2 3.00E-12 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01293 - - bhj:120080144 329.331