Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01306 ATGGCAGCCATAGCCAAAGACGAGTCAGACTACGACAGCAGCTGCTCCTCCATAACACTCCCAGACTCCACCCGCAGCTGGATGAGCAACCTAAGCTTCGGTAGCCAGCGCCGCCGTAGCAGCAGCTCAGCCACAGACGGCACTTCTCCAGTTCAAAAGCCGCACAAAGCCAACGAAGTAGCATGGGAAGCGATGCGGTGGCTCCGGGGAGCAAAAGGGGAGGTGGGGTTGGAGAATTTCCGGCTGCTACGGCGGTTAGGGAGCGGAGACATTGGGAATGTTTATCTCTGCCAGATAAGGAAGCCGACGCCGACGGCGCGTGTCGGGCAGTGCTGCTACGCGATGAAAGTGGTGGACAGAGAAGCGGTGTGTGTGAGGAATAAGGAAAGAAGAGCGGAGATGGAAAAGGAGATTCTTAAAATGATTGATCATCCGTTCTTGCCCACGCTCTATGCCGCGTTTGAAGCTTCACACTACTCTTGCTTGGTTATGGAGTTTTGTCCCGGCGGTGATTTGTACGCCGCTCGCCTCCGCCAGCCGGCGAAACGATTCTCCATTTCCTCTGCTAAGTTTTATGCGGCGGAGATAATTTTAGCCCTAGAGTATTTGCACATGATGGGCATAGTTTACAGAGATTTGAAGCCGGAAAACGTGCTGGTCAGACACGACGGTCACATAATGCTGTCGGATTTCGATCTCTGTCTCAAATGCGACGTCGTTCCGAAGCTAATCCGTTCCAGAACCACCGCCTCTGACGTCACCGAACGTTACGTCCGATCTTACTCCACGTCATCAACCACCTCCTGCGCCGCCGTCCCAATTAAGCCAGTCCTCTCCTGTTTCTCCATCGCCCGCCGCAGGAAACCCACGACCGTCACGACAATCACCGAACACGCCGACGACGATGGATACAGAGAGGAATTCGACACGGAACCGGAATTAGTAGCGGAGCCGATCAATGCCCGATCGAAATCCTTCGTGGGAACCCACGAATATTTGGCGCCGGAGGTGATTTCCGGTCAAGGACACGGCAGCGCAGTGGATTGGTGGACGGTGGGGATTTTCTTATACGAAATGCTGTACGGAAAAACCCCATTTAAAGGGGAAAACAATGAGAAGACATTAATGAACATATTGAGACAGCCATTGACGTTTCCAAGAATTGGGTTTAGTAGCAGCAAAGAGTATGAAGAAATGGTGAAAGTTGAGGATTTAATCAAGAAGCTTTTGGTGAAGAATCCCAAGAAGAGAATTGGAAGCTTAAAGGGTTCAATTGAAATCAAAAGACATGAATTTTTTAAAGGAGTAAACTGGGCGTTAATCCGCTCGGTCCGACCTCCCCATATCCCGAATTCCGACCACCTTAATCCCCGCTCCAAAAACCCTAAATTGAGCAAACAACAACGACAACAACCCTATCAAATCCCTTCTGACCGTTTCGATTACTTCTGA 1452 50.83 MAAIAKDESDYDSSCSSITLPDSTRSWMSNLSFGSQRRRSSSSATDGTSPVQKPHKANEVAWEAMRWLRGAKGEVGLENFRLLRRLGSGDIGNVYLCQIRKPTPTARVGQCCYAMKVVDREAVCVRNKERRAEMEKEILKMIDHPFLPTLYAAFEASHYSCLVMEFCPGGDLYAARLRQPAKRFSISSAKFYAAEIILALEYLHMMGIVYRDLKPENVLVRHDGHIMLSDFDLCLKCDVVPKLIRSRTTASDVTERYVRSYSTSSTTSCAAVPIKPVLSCFSIARRRKPTTVTTITEHADDDGYREEFDTEPELVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTVGIFLYEMLYGKTPFKGENNEKTLMNILRQPLTFPRIGFSSSKEYEEMVKVEDLIKKLLVKNPKKRIGSLKGSIEIKRHEFFKGVNWALIRSVRPPHIPNSDHLNPRSKNPKLSKQQRQQPYQIPSDRFDYF 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9908568 9911117 + CmaCh05G013060.1 Cma05g01306 295424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01306 483 Gene3D Phosphorylase Kinase; domain 1 77 169 - -
Cma05g01306 483 MobiDBLite consensus disorder prediction 10 52 - -
Cma05g01306 483 ProSiteProfiles Protein kinase domain profile. 80 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g01306 483 CDD STKc_phototropin_like 80 450 - -
Cma05g01306 483 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Cma05g01306 483 MobiDBLite consensus disorder prediction 449 483 - -
Cma05g01306 483 MobiDBLite consensus disorder prediction 454 475 - -
Cma05g01306 483 PANTHER PROTEIN KINASE PINOID 2 1 483 - -
Cma05g01306 483 Pfam Protein kinase domain 323 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g01306 483 Pfam Protein kinase domain 81 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g01306 483 MobiDBLite consensus disorder prediction 1 56 - -
Cma05g01306 483 SUPERFAMILY Protein kinase-like (PK-like) 61 461 IPR011009 -
Cma05g01306 483 PANTHER FLIPPASE KINASE 1-RELATED 1 483 - -
Cma05g01306 483 SMART serkin_6 80 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g01306 483 Gene3D Transferase(Phosphotransferase) domain 1 320 461 - -
Cma05g01306 483 Gene3D Transferase(Phosphotransferase) domain 1 170 235 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g01306 Cma12g01220 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00637 Cma-Chr4:3267258 Cma05g01306 Cma-Chr5:9908568 4.80E-114 dispersed
Cma05g01306 Cma-Chr5:9908568 Cma03g00597 Cma-Chr3:5305588 3.18E-142 dispersed
Cma12g01220 Cma-Chr12:9513718 Cma05g01306 Cma-Chr5:9908568 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68600 PF00069 Pkinase 1.10E-32 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01306 K08286 - csv:101202905 768.459