Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01311 ATGGTGGCCTGGATTTTGTGTTCCTTCATGTTTCTACTGGTTTTAAGGGCGGCGGTGGTTCTGTGGTGGCGGCCGAGGAAAATAGAACACCATTTCTGCCGCCAAGGAATCAGAGGCCCTCCCTACCGTTTCTTCATCGGAAATGTTAAGGAAATTGTCGGAATGATGATTAAAGCTTCCTCGGTTCACTCTTGTCCTAATTCTTCTCATAATATTCTTCCTCGTGTTCTTCCTTTTTACCATCACTGGAAGAAGATTTACGGGTCTAAATTTCTAGTGTGGTTCGGGCCAACGGTGAGATTGGCAGTGTCTGATCCAGACCTGATTCGAGAAATCTTCACATCAAAATCAGAATTCTGCGAGAAAAACGAACCTCACCCACTCGTTAAACAGCTTGAAGGCGATGGCCTCCTCAGCCTCAAAGGCCAAAAATGGGCTCTTCATCGCAAGATCATCTCTCCCTCTTTCCACATGGACAACCTCAAATTGTTGATTCCAGTGATGGCAAAAAGTGTTGTGGAAATGATGGAGAAATGGTCGGCAATGTCAGCAGATTCCGGCGAGGTGGAAATTGAAGTGTCGGAATGGTTCCAAACCCTAACGGAAGATATCATCACTAGAACCGCCTTTGGCTCAAGCTATGAAGATGGAAAAGCCATTTTTCGCTTACAAGCTCAACAAATGGTCCTTGCTTCTCAAGCCTTTGACAAAGTTTACATCCCTGGTTACAGATTCTTACCCACGAGAACGAACGTGAATTCGTGGCGATTGGATAGAGAAATAAGAAAATCGTTGATGAAATTGATCGACCGACGGCACGAGAATTCGATCGAGTCGAGCTCGAAGGATTTATTAGGGTTGATGATTCGAGCATCCAAGTCTTCTCCTTCATCTACAATCACTGTTAATGACATTGTTGAAGAGTGCAAGGGGTTTTTCTTTGCTGGCAAACAGACCACATCTAATTTGCTGACGTGGACAATGATCCTCATGGCAATGCACCCACAATGGCAGATACAGGCACGTGATGAGGTACTAAGGGTGTGTGGAGCACGTGACGTACCTTCCAAAGATGATGTTACAAAGCTCAAAACGTTGAGTATGATTATCAACGAATCCTTACGGTTATATCCACCGACAGTGGCAACTATTCGACAAGCGAAAGCTGATGTAGAGTTTGGTGGTTACATGATTCCACGTGGCACTGAACTATTGATTCCAATTTTGGCTGTTCATCATGATCAAACGATATGGGGCAATGATGTGAACGAGTTCAATCCAGGGCGATTTGCAGAAGGTGTGGCAAAGGCAGCCAATCATCGAGTTGGATTCATTCCATTTGGGCTTGGAGCTCGGACATGTATAGGCCAAAACTTGGCTATATTGCAAGCAAAGTTAGCTCTCGCACTCATTCTTCAAAAGTTCTCTTTTCGATTGGGTCCCTCTTATCAACACTCACCAGCAGTTCAGATGTTACTTTATCCACGATATGGTGCACCTATTATCTTCCAGAAGTTATCCACTTCAATGGTCCATCAAGATCAACGGTCATGA 1554 44.53 MVAWILCSFMFLLVLRAAVVLWWRPRKIEHHFCRQGIRGPPYRFFIGNVKEIVGMMIKASSVHSCPNSSHNILPRVLPFYHHWKKIYGSKFLVWFGPTVRLAVSDPDLIREIFTSKSEFCEKNEPHPLVKQLEGDGLLSLKGQKWALHRKIISPSFHMDNLKLLIPVMAKSVVEMMEKWSAMSADSGEVEIEVSEWFQTLTEDIITRTAFGSSYEDGKAIFRLQAQQMVLASQAFDKVYIPGYRFLPTRTNVNSWRLDREIRKSLMKLIDRRHENSIESSSKDLLGLMIRASKSSPSSTITVNDIVEECKGFFFAGKQTTSNLLTWTMILMAMHPQWQIQARDEVLRVCGARDVPSKDDVTKLKTLSMIINESLRLYPPTVATIRQAKADVEFGGYMIPRGTELLIPILAVHHDQTIWGNDVNEFNPGRFAEGVAKAANHRVGFIPFGLGARTCIGQNLAILQAKLALALILQKFSFRLGPSYQHSPAVQMLLYPRYGAPIIFQKLSTSMVHQDQRS 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9941119 9944307 - CmaCh05G013110.1 Cma05g01311 295429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01311 517 PRINTS E-class P450 group I signature 84 103 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma05g01311 517 PRINTS E-class P450 group I signature 200 218 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma05g01311 517 PRINTS E-class P450 group I signature 304 321 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma05g01311 517 PRINTS E-class P450 group I signature 324 350 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma05g01311 517 PRINTS E-class P450 group I signature 444 454 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma05g01311 517 PRINTS E-class P450 group I signature 454 477 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma05g01311 517 PRINTS P450 superfamily signature 315 332 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma05g01311 517 PRINTS P450 superfamily signature 368 379 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma05g01311 517 PRINTS P450 superfamily signature 445 454 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma05g01311 517 PRINTS P450 superfamily signature 454 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma05g01311 517 Gene3D Cytochrome P450 22 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma05g01311 517 Pfam Cytochrome P450 79 484 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma05g01311 517 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 447 456 IPR017972 GO:0005506|GO:0016705
Cma05g01311 517 PANTHER CYTOCHROME P450 FAMILY MEMBER 4 501 - -
Cma05g01311 517 SUPERFAMILY Cytochrome P450 71 504 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma05g01311 517 PANTHER CYTOCHROMEA2 4 501 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g01311 Cma10g00573 CCT
Cma05g01311 Cma12g01226 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01311 Cma-Chr5:9941119 Cma10g00756 Cma-Chr10:3444531 2.52E-148 dispersed
Cma17g00076 Cma-Chr17:377036 Cma05g01311 Cma-Chr5:9941119 6.71E-112 dispersed
Cma17g00077 Cma-Chr17:381497 Cma05g01311 Cma-Chr5:9941119 1.22E-108 dispersed
Cma18g01092 Cma-Chr18:8973840 Cma05g01311 Cma-Chr5:9941119 9.83E-45 dispersed
Cma10g00573 Cma-Chr10:2620518 Cma05g01311 Cma-Chr5:9941119 0 wgd
Cma11g00556 Cma-Chr11:2693602 Cma05g01311 Cma-Chr5:9941119 0 wgd
Cma12g01226 Cma-Chr12:9549605 Cma05g01311 Cma-Chr5:9941119 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01311 K15639 - csv:101208789 948.732