Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01321 ATGGCGGCGTCAATTTCTCTCTGCTCTGTTTTTCTTCTTCTTCTTCTGACTCAGTGGGTCAACTCGGAGCCGACTCAGGACAAACAAGCGCTTCTCGATTTCCTCTCTAAAACCCCTCATGCCAATCGGGTTCAATGGAATCCTTCCAATTCCGTCTGTACTTGGATCGGCGTCGAGTGCGATTCCAACCAGTCGTTTGTTTACTCCCTTCGTTTGCCCGGCGTTGGCCTCGTCGGTCTGATTCCGGCCAATACCATCGGGAAATTGACTCAGCTCCGAGTTCTCAGCCTCCGTTCCAACCGTCTCTCCGGTGGGATCCCATCGGATTTTTCCAATTTGATAATGCTGCGGAATCTGTATCTTCAGGATAATGCTTTCTCCGGCGAGTTTCCACCGAGTTTGACTCAGCTAACTCGGCTGACTCGGCTCGATTTGTCGTCGAATAATATGTCCGGTCCGATTCCGCCGTCTGTTGACAATCTGACACATCTGAGTGGGCTTTTCTTGCAGAACAATGGGTTCTCCGGTTCACTCCCGAATATCTCCGCCGTGAATTTAACAAACTTCAATGTCTCTAACAACAAACTCAACGGCTCGATTCCGAAATCGTTAGCTAAATTCCCGGAATCCTCGTTCGCCGGAAACTTAGATCTTTGCGGCGGACCATTCCCATCATGCGGCGGACCCTCTCCAACTCCATCGCAAAACCCCCCACCGACCGACGGAATCAGAAAATCCAAGAAGCTCTCCACGGCGGCGATAATCGGAATAATCATCGGCGCTGTTTTCGCTGCCTTTCTCCTCCTCCTCTTCCTCATCCTCTGTCTTCGACGACGGTCCAGTAGGCAGCCGGCGAAGTCACAGAAACCACCGTCGACAGTGGGAACAATGGCGAGAACAATCCCAGTAGTGGAGGCGGGAACATCATCATCAAAAGACGACATTACCGGAGGGTCAATTGAGGCGACGGAGAGGAACAAGTTAGTGTTCTTCGAAGGAGGGATTTACAATTTCGATTTGGAGGATTTGTTGAGAGCATCGGCGGAGGTATTGGGGAAAGGAAGCGTGGGAACGTCGTACAAGGCGGTGCTGGAGGAAGGGACGACGGTGGTGGTGAAGCGTCTGAAGGATGTGGTGGTGACGAAGAAGGAATTCGAAACACAATTGGAGATTTTAGGGAAAATCAAACACGAAAATGTGGTTCCACTCAGAGCTTTCTACTTCTCCAAAGATGAAAAACTGCTCGTTTATGATTACATCTCCACCGGCAGCTTCTCCGCCAGTCTCCACGGAAGCAGAGGCTCCGGTAGGACGCCGCTGGATTGGGATTCAAGAATGAGAATAGCAGTAAGCGTCGGCCGGGGACTAACCCATCTCCACGTCGTCGGCAAGGTGGTTCACGGCAACATTAAATCCTCCAACATTCTTCTCCGGCCGGACCACGACGCCTGCATTTCCGATTTCGGCCTGAATTCCCTCTTCGGCACCGCCACGCCGCCGAATCGCGTCGCCGGCTACAGAGCACCAGAGGTCGTCGAGACCCGGAAAGTCACATTCAAATCGGACGTTTACAGCTACGGCGTTCTCCTCCTCGAGCTTCTGACCGGAAAAGCCCCCAACCAGCAATCCCTTGGCGAAGACGGAATCGACCTCCCACGGTGGGTCCAATCCGTCGTCCGGGAGGAATGGACGGCGGAGGTTTTCGACGCAGAGCTAATGCGGTTCCACAATATCGAAGAAGAGATGGTTCAATTGCTGCAAATTGCAATGTCCTGCGTTTCGACTGTCCCCGATCAACGACCGACGATGCCGGAAGTTGTACGGATGATCGAAGATATGAACAGTCATAGAAGCGAGACCGATGATGGGTTGCGTCAGTCTTCCGATGACCCATCGAAAGGATCGGACGTGAACACCCCGCCGGCGGAGTCTAGAACTCCGCCGCGAGTGACGCCGTAA 1959 52.88 MAASISLCSVFLLLLLTQWVNSEPTQDKQALLDFLSKTPHANRVQWNPSNSVCTWIGVECDSNQSFVYSLRLPGVGLVGLIPANTIGKLTQLRVLSLRSNRLSGGIPSDFSNLIMLRNLYLQDNAFSGEFPPSLTQLTRLTRLDLSSNNMSGPIPPSVDNLTHLSGLFLQNNGFSGSLPNISAVNLTNFNVSNNKLNGSIPKSLAKFPESSFAGNLDLCGGPFPSCGGPSPTPSQNPPPTDGIRKSKKLSTAAIIGIIIGAVFAAFLLLLFLILCLRRRSSRQPAKSQKPPSTVGTMARTIPVVEAGTSSSKDDITGGSIEATERNKLVFFEGGIYNFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVTKKEFETQLEILGKIKHENVVPLRAFYFSKDEKLLVYDYISTGSFSASLHGSRGSGRTPLDWDSRMRIAVSVGRGLTHLHVVGKVVHGNIKSSNILLRPDHDACISDFGLNSLFGTATPPNRVAGYRAPEVVETRKVTFKSDVYSYGVLLLELLTGKAPNQQSLGEDGIDLPRWVQSVVREEWTAEVFDAELMRFHNIEEEMVQLLQIAMSCVSTVPDQRPTMPEVVRMIEDMNSHRSETDDGLRQSSDDPSKGSDVNTPPAESRTPPRVTP 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9993107 9997551 - CmaCh05G013210.1 Cma05g01321 295439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01321 652 Gene3D Ribonuclease Inhibitor 24 183 IPR032675 -
Cma05g01321 652 Gene3D Ribonuclease Inhibitor 186 227 IPR032675 -
Cma05g01321 652 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
Cma05g01321 652 Gene3D Transferase(Phosphotransferase) domain 1 421 633 - -
Cma05g01321 652 MobiDBLite consensus disorder prediction 614 629 - -
Cma05g01321 652 Pfam Protein kinase domain 348 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g01321 652 PANTHER RECEPTOR-LIKE KINASE 8 640 - -
Cma05g01321 652 MobiDBLite consensus disorder prediction 630 644 - -
Cma05g01321 652 ProSiteProfiles Protein kinase domain profile. 345 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g01321 652 MobiDBLite consensus disorder prediction 614 652 - -
Cma05g01321 652 SUPERFAMILY L domain-like 34 207 - -
Cma05g01321 652 MobiDBLite consensus disorder prediction 223 245 - -
Cma05g01321 652 PANTHER OS05G0588300 PROTEIN 8 640 - -
Cma05g01321 652 SUPERFAMILY Protein kinase-like (PK-like) 349 615 IPR011009 -
Cma05g01321 652 Pfam Leucine Rich Repeat 139 161 IPR001611 GO:0005515
Cma05g01321 652 Pfam Leucine Rich Repeat 91 113 IPR001611 GO:0005515
Cma05g01321 652 Gene3D Phosphorylase Kinase; domain 1 313 419 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g01321 Cma10g00590 CCT
Cma05g01321 Cma11g00586 CCT
Cma05g01321 Cma12g01230 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00985 Cma-Chr4:5060054 Cma05g01321 Cma-Chr5:9993107 3.07E-125 dispersed
Cma05g01321 Cma-Chr5:9993107 Cma20g00302 Cma-Chr20:1479484 0 dispersed
Cma10g00590 Cma-Chr10:2696267 Cma05g01321 Cma-Chr5:9993107 0 wgd
Cma11g00586 Cma-Chr11:2810031 Cma05g01321 Cma-Chr5:9993107 0 wgd
Cma12g01230 Cma-Chr12:9622730 Cma05g01321 Cma-Chr5:9993107 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68601 PF00069 Pkinase 3.60E-38 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01321 - - csv:101205802 1073.54