Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01334 ATGGAAAAAGAAAAAAGAATCTGGTGGGGTTTGAGCTGTAATATAGCTGTCCCTTTTTTCACGTATTATTTCTCCCCCACAGGCTCACACACACAAACCTCTGAAATCCCTCTTTATCTTTCTCTCCCACATTTTGAAGCTCAGATCTCAAAGAAACAAGGGATTTCAGAATTTTCCTGCAAAAAAAATAAACCCAAAAGAAAAGGAAAATCCGCCATTCTGTTTGAGAAAGGGTTTAGCGAAGGAAGGAAGGAAGGAAGAAAGCTGAAGAAAGTGGGAGTTTGTGGAATCAGATGTCTCTCATATGAGATGAAGACCCATTCCCATTTCAACATTCATCTTTTCTTCCAAATTTTCCTCTTCTTCGGCACTCTTTTCTGCCTCTCCTCTGCTGTTTCTGGGGAGCTTCTTCAACTTTCCGGCCATGGCGGCCCAGGCCGAGGCCTCACCGACGCCGAAGCTCACTACATCCGTCAGCGCCAACTCCTTTCCGTCAGAGACGAATTCGGCGACCGCGGTGAAGAAGTCACCGTCGATCCCAAGCTTGTTTTTGAAAACGACAGAATAAGAAATGCTTACATAGCCTTACAAGCTTGGAAGCAAGCGATTCTCTCTGATCCTTTCAATCTCACTCAGAATTGGGTTGGATCTGATGTTTGTAGCTACAATGGGGTTTTCTGTGCTCCGGCGCCGGATAATTCCTCGATCCGTACGGTCGCCGGTATCGACCTCAACCATGGCGACATTGCCGGTTACTTACCGGAGGAGCTTGGTCTTCTTGTGGATCTTGCATTGTTTCATGTAAACTCGAATCGCTTCTGTGGGACTGTTCCTCACAAGTTCAAGAACTTGAAGCGGTTGTTTGAGTTGGATCTGAGCAACAATCGCTTCGCCGGAAAGTTCCCTCGGGTGGTTCTTGAGCTGCCGGAGCTGAAGTTTTTGGATCTGAGATTTAATGAGTTTGAAGGAACTGTCCCCAAGGAGCTTTTCGACAAGGATTTGGACGCCATTTTCATCAACCATAACAGATTCCGGTTTGACTTGCCGGAAAATTTCGGGAACTCGCCAGTTTCGGTTATTGTTCTTGCGAATAACAAATTTCATGGGTGTGTTCCGGGGAGCATTGGGAATATGACGAGATTGAATGAGATTATTCTGATGAATAATGGGTTTCGATCGTGTTTGCCGTCGGAGATTGGGTTTCTGAAGAATCTGACGGTGTTTGATGTGAGTTTTAATGAGTTTTTTGGGAGTTTGCCGGAGACGATCGGCGGAATGGTGAGTTTAGAGCAGCTGAATGTGGCGCATAATTTCTTGTCTGGGAAGATTCCGGGGAGTATCTGTAAATTGCCGAATCTGCAGAACTTTACTTACTCTTACAATTTCTTTACGGGAGAGGCGCCGTCGTGCTTGGCTTTGCCGGATTTTGATGACCGGAGGAACTGTCTACCTGAGCGGCCGGTACAGCGGTCTGAGAGGCAATGTAAGTCGTTCTTGTCTAAGCCTGTGGATTGCAGTTCTTTTGGATGTCCTACTTATGTTGCTCCCTCGCCACCTGTAACGGTGCCTTCTCCGCCACCTGTTGTTGTTCCGTCGCCGCGGCCACCTGTTCCCACTCCTTCGCCACCTACTTCCGAATCACATCCCATTTACCGACCACGCCCTCCGCCACCTCCATCCCCCTCTCCCCCTCCGCCGCCTGTTTACTCTCCCCCGCCGCCTCCACCATCTCCACCACCGCCAGTTTATTCTCCACCCCCACCTCCCCCGTCTCCCCCTCCGCCTTCACCACCACCGCCGCCCCCACCGGTTTACTCTCCACCCCCGCCTCCACCATCACCTCCACCGCCATCACCACCACCACCGCCCCCACCGGTTTACTCTCCACCCCCGCCTCCACCATCACCTCCACCGCCATCACCACCACCACCGCCCCCACCGGTTTACTCTCCACCCCCGCCTCCACCATCACCTCCACCGCCATCACCACCACCACCGCCCCCACCGGTTTACTCTCCACCCCCGCCTCCACCATCACCTCCACCGCCATCACCACCACCACCGCCCCCACCGGTTTACTCTCCACCCCCGCCTCCACCATCACCTCCACCGCCATCACCACCACCACCGCCCCCACCGGTTTACTCTCCACCCCCGCCTCCACCATCACCTCCACCGCCATCACCACCACCACCGCCCCCACCGGTTTACTCTCCACCCCCGCCTCCACCATCACCTCCACCGCCATCACCACCACCACCGCCCCCACCGGTTTACTCTCCACCCCCGCCTCCACCATCACCTCCACCGCCATCACCACCACCACCGCCCCCACCGGTTTACTCTCCACCCCCGCCTCCACCATCACCTCCACCGCCATCACCACCACCACCGCCCCCACCGGTTTACTCTCCACCCCCGCCTCCACCATCACCTCCACCGCCATCACCACCACCACCGCCCCCACCGGTTTACTCTCCACCCCCGCCTCCACCATCACCTCCACCGCCATCACCACCACCACCGCCCCCACCGGTTTACTCTCCACCCCCGCCTCCACCATCACCTCCACCGCCATCACCACCACCACCGCCCCCACCGGTTTACTCTCCACCCCCGCCTCCACCATCACCTCCACCGCCATCACCACCACCACCGCCCCCACCGGTTTACTCTCCACCCCCGCCTCCACCATCACCTCCACCACCATCACCCCCACCACCATCGCCCCCACCGCCATCACCCTCACCACCCCCACCATCTCCTCCACCGCCTTCTCCTCCCCCACCATCACCGGTGTATTGTGTACGTCCATCACCCCCACCGCCACCACCAAACTCTCCCCCACCTCCTCCTCCCTTGTTCTCACCACCCCCACCTGTTTACTACTACAATTCACCACCACCGCCCAACTCTCCACCTCCGCCGCCACTGTACTCTCCTCCTCCACCTCCCAACTCGCCGCCTCCTCCACCACATTCACCTCCACCGCCAATCTATCCTTACTTATCTCCCCCACCTCCTCCACCTGTCTATTCTCCCCCTCCACCAGTCTATTCACCGCCCCCCCCACCACCGTGTATAGAGCCTCCTCCACCTCCGCCGCCACCATGTATTGAGTATCATGAACCCCCACCACCACCGTCACCCTCACCACCTCCGCCCATCCAATACCTTCCTCCGCCGTCTCCTTCACCCCCACCACCACCGCCTCCCACCCCAGTTTACCATTCACCTCCTCCGCCAGTCTATTACTCTCCCCCACCACCACCATCACCATCTCCACCACCACCACCTGCATCACCACCACCATCACCTGTATACGATGGCCCACTACCACCAATCTATGGAGTTTCGTACGCCTCTCCCCCACCTCCACCCTACTATTGA 3390 56.4 MEKEKRIWWGLSCNIAVPFFTYYFSPTGSHTQTSEIPLYLSLPHFEAQISKKQGISEFSCKKNKPKRKGKSAILFEKGFSEGRKEGRKLKKVGVCGIRCLSYEMKTHSHFNIHLFFQIFLFFGTLFCLSSAVSGELLQLSGHGGPGRGLTDAEAHYIRQRQLLSVRDEFGDRGEEVTVDPKLVFENDRIRNAYIALQAWKQAILSDPFNLTQNWVGSDVCSYNGVFCAPAPDNSSIRTVAGIDLNHGDIAGYLPEELGLLVDLALFHVNSNRFCGTVPHKFKNLKRLFELDLSNNRFAGKFPRVVLELPELKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFRFDLPENFGNSPVSVIVLANNKFHGCVPGSIGNMTRLNEIILMNNGFRSCLPSEIGFLKNLTVFDVSFNEFFGSLPETIGGMVSLEQLNVAHNFLSGKIPGSICKLPNLQNFTYSYNFFTGEAPSCLALPDFDDRRNCLPERPVQRSERQCKSFLSKPVDCSSFGCPTYVAPSPPVTVPSPPPVVVPSPRPPVPTPSPPTSESHPIYRPRPPPPPSPSPPPPPVYSPPPPPPSPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPSPPPPSPSPPPPSPPPPSPPPPSPVYCVRPSPPPPPPNSPPPPPPLFSPPPPVYYYNSPPPPNSPPPPPLYSPPPPPNSPPPPPHSPPPPIYPYLSPPPPPPVYSPPPPVYSPPPPPPCIEPPPPPPPPCIEYHEPPPPPSPSPPPPIQYLPPPSPSPPPPPPPTPVYHSPPPPVYYSPPPPPSPSPPPPPASPPPSPVYDGPLPPIYGVSYASPPPPPYY 1129
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10085979 10089368 - CmaCh05G013340.1 Cma05g01334 295452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01334 1129 Pfam Leucine Rich Repeat 428 450 IPR001611 GO:0005515
Cma05g01334 1129 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 120 545 - -
Cma05g01334 1129 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 5 120 545 - -
Cma05g01334 1129 MobiDBLite consensus disorder prediction 1087 1129 - -
Cma05g01334 1129 Gene3D Ribonuclease Inhibitor 193 353 IPR032675 -
Cma05g01334 1129 Gene3D Ribonuclease Inhibitor 354 495 IPR032675 -
Cma05g01334 1129 MobiDBLite consensus disorder prediction 1038 1073 - -
Cma05g01334 1129 MobiDBLite consensus disorder prediction 969 996 - -
Cma05g01334 1129 Pfam Leucine rich repeat 266 320 IPR001611 GO:0005515
Cma05g01334 1129 PRINTS Proline rich extensin signature 535 551 - -
Cma05g01334 1129 PRINTS Proline rich extensin signature 569 590 - -
Cma05g01334 1129 PRINTS Proline rich extensin signature 517 529 - -
Cma05g01334 1129 PRINTS Proline rich extensin signature 556 568 - -
Cma05g01334 1129 SUPERFAMILY L domain-like 193 473 - -
Cma05g01334 1129 MobiDBLite consensus disorder prediction 528 951 - -
Cma05g01334 1129 Pfam Leucine rich repeat N-terminal domain 195 227 IPR013210 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g01334 Cma10g00602 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01334 Cma-Chr5:10085979 Cma09g00199 Cma-Chr9:826607 9.31E-19 dispersed
Cma11g00594 Cma-Chr11:2842285 Cma05g01334 Cma-Chr5:10085979 4.63E-55 dispersed
Cma17g00446 Cma-Chr17:2660615 Cma05g01334 Cma-Chr5:10085979 1.41E-116 dispersed
Cma10g00602 Cma-Chr10:2780772 Cma05g01334 Cma-Chr5:10085979 6.05E-07 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01334 - - cmax:111493802 837.41