Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01345 ATGGAGAATTTGGATAATGTCGGGACGATTATTCCGATACCCTTCATGAGGAATGTTGTGTTGGAGAGTTCAGAGGTCGGAATCGTCATTCCGATGTCGTTCTTGAAGAATGTCGGATCTGTTAATGATTTAAATTTGATGGGGGAAGAAGATTCCGCAGGTGCACCTCAGAAGAAGGCTCAATCGGAGGGTGCTGCGTTGAGTAATTCTTCGTCATCGGATATTCCATCTAAGAAGCTCGCTAGGCAGCTCGATTTCACCGGCTATGGAGGCGCCTCGCATCCCCAATCTCATTCAGACCCGCATTCACAGCCACAGGCTCCATTAGTAGCTCAAAATCTTCCGCAAGCTCCGCCAAAGCCACCGCCGCAGATGGTGGCGGCGTCGATCGCATCTTTGGCGCCTCATTCGTCAGTAAGAGCTGTGAAACCAGAATCACCAATGCCAAGAGCAAGACCTGCCATTGAAGCTAAAGACAGTACTCCTAAGAAGCAAAAACAGTGTAACTGTAAACATTCGCGGTGTCTAAAATTGTACTGTGAATGCTTTGCTTCTGGAATATACTGTGATGGTTGCAACTGCATAAATTGTTATAACAATGTTGAAAATGATACTGCTAGAAGAGAAGCAGTTGAAGCTACATTAGAGCGTAACCCAAATGCGTTTCGACCAAAAATTGCAAGCAGCCCTCATGGGATGCGGGACAACAGGGAGGAGGCGGGGGAGTTGCTGATGTTGGGTAAGCACAATAAGGGATGCCACTGCAAGAAGTCAGGTTGTCTAAAGAAATATTGCGAGTGTTTCCAGGCAAACATTCTCTGCTCCGAAAATTGTAAATGTATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAAGCTCTTTTCCATGGAGATCATGGTAACAACATAGCATTCATTCAACAAGCAGCCAATGCTGCCATAACTGGAGCTATTGGCTCCTCTGGCTATGCTTCACCTCCTGTATCCAAGAAAAGAAAAGGCCAAGAACTCTACTTTGGACTGACAGCCAAGGAACTACCCGCTCATAGGCCAGTGCCATTTCAACAGCAGGCAAATCATATCAGAGTCGCTGCTCCTCCGCTACCGTCCTTCCCCATTGCTGGCGTTGGAACCCCATCATTGTTGGGTCCTTCAAAGTTCACATATAGGTCTTTAATGGCAGACATCATTCAATCACAAGATTTAAAGGATCTTTGCTCGGTTTTGGTTGTGCTGTCGAGTGAAGCTGCCAAGACATTTCAAGACCAAACAAATGCCACTGAAAAGCAATCTGATGCCCAGACAGAAACTTCTGCTGCATCATCCACTCAAGATAGGTTGCAGAAAAAAGATGCATCTGATGAGAAAGCTGCAGCCAATGATCGTTCAAGTGCGAACCAGACTGATAAACCAACCCCCGACGATTCCAATTCAGATGGTGGAGATGTGCCAAAGGGCGCGCCCATGTCTCCCGGAACTTTAGCTTTGATGTGCGATGAGCAAGATACAATGCTAATGGCTACTGCTTCCCCCAATAGATTAATGGGTCCTGGCTGCAGCACGTCTTCACAGCTGCCTCACGGACGAGACACGTCAGAGGTCTATGCGGAGCAGGAGAGGATCGTCCTTACAAAGCTTAGGGATTGTCTTAATAGACTCATCACTTTGGGAGAAATAAAAGAGACACAATGTTCATCTTTAGCCAGAAGTGAAGTAGGTAATCAAGAACAACAATTTAACAATGGCGCCACAAATTCTAGAACCGAAACTCAGAGTAATCTTGGTCAACTCAACAATAAAGTTACAAAATCTTCGATTCCACCGTCGGTGAAGACGTCGCAGACAGTAACTGCAGCAGTCATGACCCTTAGTAACGACCAGCGACAGAAAGTTTTGCCTCTGTCTTGA 1911 46.21 MENLDNVGTIIPIPFMRNVVLESSEVGIVIPMSFLKNVGSVNDLNLMGEEDSAGAPQKKAQSEGAALSNSSSSDIPSKKLARQLDFTGYGGASHPQSHSDPHSQPQAPLVAQNLPQAPPKPPPQMVAASIASLAPHSSVRAVKPESPMPRARPAIEAKDSTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENDTARREAVEATLERNPNAFRPKIASSPHGMRDNREEAGELLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGNNIAFIQQAANAAITGAIGSSGYASPPVSKKRKGQELYFGLTAKELPAHRPVPFQQQANHIRVAAPPLPSFPIAGVGTPSLLGPSKFTYRSLMADIIQSQDLKDLCSVLVVLSSEAAKTFQDQTNATEKQSDAQTETSAASSTQDRLQKKDASDEKAAANDRSSANQTDKPTPDDSNSDGGDVPKGAPMSPGTLALMCDEQDTMLMATASPNRLMGPGCSTSSQLPHGRDTSEVYAEQERIVLTKLRDCLNRLITLGEIKETQCSSLARSEVGNQEQQFNNGATNSRTETQSNLGQLNNKVTKSSIPPSVKTSQTVTAAVMTLSNDQRQKVLPLS 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10160668 10166458 - CmaCh05G013450.1 Cma05g01345 295463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01345 636 MobiDBLite consensus disorder prediction 48 165 - -
Cma05g01345 636 MobiDBLite consensus disorder prediction 62 78 - -
Cma05g01345 636 MobiDBLite consensus disorder prediction 460 475 - -
Cma05g01345 636 PANTHER TESMIN/TSO1-RELATED 100 624 IPR028307 -
Cma05g01345 636 MobiDBLite consensus disorder prediction 90 111 - -
Cma05g01345 636 SMART CXC_2 163 203 IPR033467 -
Cma05g01345 636 SMART CXC_2 248 289 IPR033467 -
Cma05g01345 636 MobiDBLite consensus disorder prediction 421 495 - -
Cma05g01345 636 MobiDBLite consensus disorder prediction 421 447 - -
Cma05g01345 636 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 251 285 IPR005172 -
Cma05g01345 636 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 165 200 IPR005172 -
Cma05g01345 636 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 100 624 - -
Cma05g01345 636 ProSiteProfiles CRC domain profile. 164 288 IPR005172 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g01345 Cma10g00634 CCT
Cma05g01345 Cma10g00634 ECH
Cma05g01345 Cma12g01257 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01345 Cma-Chr5:10160668 Cma12g01257 Cma-Chr12:9804970 0 dispersed
Cma10g00634 Cma-Chr10:2900631 Cma05g01345 Cma-Chr5:10160668 0 wgd
Cma11g00619 Cma-Chr11:2966019 Cma05g01345 Cma-Chr5:10160668 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35115 PF03638 TCR 3.40E-12 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01345 - - csv:101211978 1050.43