Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01346 ATGGAACCTCCACCGGCCAAGAGCTGGAGCATCCACACTCGGCCGGATATCATCCAGAAGTACCAGATCCTCGAGCGAGTCGGATCCGGTGCTTATTCCGATGTTCACCGTGCGCGACGGCTCTCCGACGGCGTCATCGTCGCTTTGAAGGAGATCCACGATTATCAATCGGCGTTCCGCGAAATCGAGGCGCTCCAAATCCTTCAAGGTTCGCCTAATATCGTCGTTCTGCACGAGTACTTTTGGCGCGAAGATGAAGATGCCGTGCTTGTTCTCGAGTTTATGAGAACGGATTTGGCCACCGTTATAGCGGAGGCGAAGAAGCGAGGGTCGGACGGGGTAGAATCCGGGCGTGGGCTAGCGGTCGGTGAGGTGAAGCGGTGGATGATCCAGATTTTGAGTGGTCTTGATGCTTGTCATAGGAATATGATCGTGCATAGGGATTTGAAACCTAGCAATTTGTTGATATCCGATGATGGCGTGCTCAAGCTTGCCGATTTTGGACAGGCAAGAATACTCATGGAGCCTGAATATGTTGAACCAAATGGGATCTCTCAACCATGTGAGATGAACTCTTCAGATCAAGTACCTGCTTCTCAGCCCTCTGCAATTTTTCCTGGAACGGAAAGCTCGGTTCGAGAAGGTAACAGAACTGAAGAGCAAGAACCAATTGGCAAGGAGGAATATTTTAGCGATTTAGGCGAGCTGAAAGCAAAAAATTCAGCAAATGAATTTGACAAGGAAACATATACTTATGATGGAGATACATCTTGCTTAGCAACATGTACCACGAGTGACCTTGAAGATGATCCATTTAAAGGTTCATCATATTCTTATGAAACTGAAGGAGGAGTTCCAGCAGATGATAGCCAAGGTTCGCTCACTTCATCCGTCGGTACTCGCTGGTTCAGGGCCCCCGAATTACTCTATGGCTCAACGAGCTACGGTTTGGAGATCGACTTATGGTCGTTGGGCTGCATTTTTGCTGAACTTTTTACATTGGAACCCCTTTTTCCAGGAACTGCTGACATTGATCAAATGAGCAAAATTTTCACTACTCTTGGCAACTTGACTGAAGATTCATGGCCAGGTTGTTCTGAACTTCCTGATTTCCATATTATATCATTCAACACAATAGAAAAGCCAATCGGTTTAGAAGCATGTCTTCCCAACTGCTCTCCTGATGAAATTTCTATTGTTAAAAGACTGCTTTGTTACGACCCGGCTAATCGAGCGACCGCTATGGAATTGCTCCAAGATAAGTATTTCACTGAGGATCCATTCCCAGTTCCGTTGGCTGAGCTTCGTGTTCCTTTGACCAGAAGTGGACAGGACGAGGATTCTCCTGCTGGATGGTACGATTACGATGAGTCCGATTCCGATATGGATGAACTCGGCCCCATGAACGTTACCACCAGTGCCACTGGTTACTCCATACAATTTGATTGA 1449 47.07 MEPPPAKSWSIHTRPDIIQKYQILERVGSGAYSDVHRARRLSDGVIVALKEIHDYQSAFREIEALQILQGSPNIVVLHEYFWREDEDAVLVLEFMRTDLATVIAEAKKRGSDGVESGRGLAVGEVKRWMIQILSGLDACHRNMIVHRDLKPSNLLISDDGVLKLADFGQARILMEPEYVEPNGISQPCEMNSSDQVPASQPSAIFPGTESSVREGNRTEEQEPIGKEEYFSDLGELKAKNSANEFDKETYTYDGDTSCLATCTTSDLEDDPFKGSSYSYETEGGVPADDSQGSLTSSVGTRWFRAPELLYGSTSYGLEIDLWSLGCIFAELFTLEPLFPGTADIDQMSKIFTTLGNLTEDSWPGCSELPDFHIISFNTIEKPIGLEACLPNCSPDEISIVKRLLCYDPANRATAMELLQDKYFTEDPFPVPLAELRVPLTRSGQDEDSPAGWYDYDESDSDMDELGPMNVTTSATGYSIQFD 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10166568 10168775 - CmaCh05G013460.1 Cma05g01346 295464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01346 482 ProSiteProfiles Protein kinase domain profile. 21 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g01346 482 PANTHER CELL DIVISION PROTEIN KINASE 18 439 - -
Cma05g01346 482 MobiDBLite consensus disorder prediction 439 471 - -
Cma05g01346 482 Pfam Protein kinase domain 21 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g01346 482 Pfam Protein kinase domain 291 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g01346 482 SMART serkin_6 21 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g01346 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Cma05g01346 482 PANTHER CYCLIN-DEPENDENT KINASE 10 18 439 - -
Cma05g01346 482 SUPERFAMILY Protein kinase-like (PK-like) 7 439 IPR011009 -
Cma05g01346 482 Gene3D Phosphorylase Kinase; domain 1 13 111 - -
Cma05g01346 482 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Cma05g01346 482 Gene3D Transferase(Phosphotransferase) domain 1 259 428 - -
Cma05g01346 482 Gene3D Transferase(Phosphotransferase) domain 1 114 229 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g01346 Cma12g01259 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01346 Cma-Chr5:10166568 Cma11g00298 Cma-Chr11:1477703 1.41E-20 dispersed
Cma12g01259 Cma-Chr12:9818409 Cma05g01346 Cma-Chr5:10166568 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68602 PF00069 Pkinase 6.20E-32 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01346 - - csv:101209606 867.84