Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma05g01346 | ATGGAACCTCCACCGGCCAAGAGCTGGAGCATCCACACTCGGCCGGATATCATCCAGAAGTACCAGATCCTCGAGCGAGTCGGATCCGGTGCTTATTCCGATGTTCACCGTGCGCGACGGCTCTCCGACGGCGTCATCGTCGCTTTGAAGGAGATCCACGATTATCAATCGGCGTTCCGCGAAATCGAGGCGCTCCAAATCCTTCAAGGTTCGCCTAATATCGTCGTTCTGCACGAGTACTTTTGGCGCGAAGATGAAGATGCCGTGCTTGTTCTCGAGTTTATGAGAACGGATTTGGCCACCGTTATAGCGGAGGCGAAGAAGCGAGGGTCGGACGGGGTAGAATCCGGGCGTGGGCTAGCGGTCGGTGAGGTGAAGCGGTGGATGATCCAGATTTTGAGTGGTCTTGATGCTTGTCATAGGAATATGATCGTGCATAGGGATTTGAAACCTAGCAATTTGTTGATATCCGATGATGGCGTGCTCAAGCTTGCCGATTTTGGACAGGCAAGAATACTCATGGAGCCTGAATATGTTGAACCAAATGGGATCTCTCAACCATGTGAGATGAACTCTTCAGATCAAGTACCTGCTTCTCAGCCCTCTGCAATTTTTCCTGGAACGGAAAGCTCGGTTCGAGAAGGTAACAGAACTGAAGAGCAAGAACCAATTGGCAAGGAGGAATATTTTAGCGATTTAGGCGAGCTGAAAGCAAAAAATTCAGCAAATGAATTTGACAAGGAAACATATACTTATGATGGAGATACATCTTGCTTAGCAACATGTACCACGAGTGACCTTGAAGATGATCCATTTAAAGGTTCATCATATTCTTATGAAACTGAAGGAGGAGTTCCAGCAGATGATAGCCAAGGTTCGCTCACTTCATCCGTCGGTACTCGCTGGTTCAGGGCCCCCGAATTACTCTATGGCTCAACGAGCTACGGTTTGGAGATCGACTTATGGTCGTTGGGCTGCATTTTTGCTGAACTTTTTACATTGGAACCCCTTTTTCCAGGAACTGCTGACATTGATCAAATGAGCAAAATTTTCACTACTCTTGGCAACTTGACTGAAGATTCATGGCCAGGTTGTTCTGAACTTCCTGATTTCCATATTATATCATTCAACACAATAGAAAAGCCAATCGGTTTAGAAGCATGTCTTCCCAACTGCTCTCCTGATGAAATTTCTATTGTTAAAAGACTGCTTTGTTACGACCCGGCTAATCGAGCGACCGCTATGGAATTGCTCCAAGATAAGTATTTCACTGAGGATCCATTCCCAGTTCCGTTGGCTGAGCTTCGTGTTCCTTTGACCAGAAGTGGACAGGACGAGGATTCTCCTGCTGGATGGTACGATTACGATGAGTCCGATTCCGATATGGATGAACTCGGCCCCATGAACGTTACCACCAGTGCCACTGGTTACTCCATACAATTTGATTGA | 1449 | 47.07 | MEPPPAKSWSIHTRPDIIQKYQILERVGSGAYSDVHRARRLSDGVIVALKEIHDYQSAFREIEALQILQGSPNIVVLHEYFWREDEDAVLVLEFMRTDLATVIAEAKKRGSDGVESGRGLAVGEVKRWMIQILSGLDACHRNMIVHRDLKPSNLLISDDGVLKLADFGQARILMEPEYVEPNGISQPCEMNSSDQVPASQPSAIFPGTESSVREGNRTEEQEPIGKEEYFSDLGELKAKNSANEFDKETYTYDGDTSCLATCTTSDLEDDPFKGSSYSYETEGGVPADDSQGSLTSSVGTRWFRAPELLYGSTSYGLEIDLWSLGCIFAELFTLEPLFPGTADIDQMSKIFTTLGNLTEDSWPGCSELPDFHIISFNTIEKPIGLEACLPNCSPDEISIVKRLLCYDPANRATAMELLQDKYFTEDPFPVPLAELRVPLTRSGQDEDSPAGWYDYDESDSDMDELGPMNVTTSATGYSIQFD | 482 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 10166568 | 10168775 | - | CmaCh05G013460.1 | Cma05g01346 | 295464 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma05g01346 | 482 | ProSiteProfiles | Protein kinase domain profile. | 21 | 423 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma05g01346 | 482 | PANTHER | CELL DIVISION PROTEIN KINASE | 18 | 439 | - | - | |
Cma05g01346 | 482 | MobiDBLite | consensus disorder prediction | 439 | 471 | - | - | |
Cma05g01346 | 482 | Pfam | Protein kinase domain | 21 | 177 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma05g01346 | 482 | Pfam | Protein kinase domain | 291 | 423 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma05g01346 | 482 | SMART | serkin_6 | 21 | 423 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma05g01346 | 482 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 144 | 156 | IPR008271 | GO:0004672|GO:0006468 | |
Cma05g01346 | 482 | PANTHER | CYCLIN-DEPENDENT KINASE 10 | 18 | 439 | - | - | |
Cma05g01346 | 482 | SUPERFAMILY | Protein kinase-like (PK-like) | 7 | 439 | IPR011009 | - | |
Cma05g01346 | 482 | Gene3D | Phosphorylase Kinase; domain 1 | 13 | 111 | - | - | |
Cma05g01346 | 482 | ProSitePatterns | Protein kinases ATP-binding region signature. | 27 | 50 | IPR017441 | GO:0005524 | |
Cma05g01346 | 482 | Gene3D | Transferase(Phosphotransferase) domain 1 | 259 | 428 | - | - | |
Cma05g01346 | 482 | Gene3D | Transferase(Phosphotransferase) domain 1 | 114 | 229 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma05g01346 | Cma12g01259 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g01346 | Cma-Chr5:10166568 | Cma11g00298 | Cma-Chr11:1477703 | 1.41E-20 | dispersed | |
Cma12g01259 | Cma-Chr12:9818409 | Cma05g01346 | Cma-Chr5:10166568 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68602 | PF00069 | Pkinase | 6.20E-32 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma05g01346 | - | - | csv:101209606 | 867.84 |