Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01358 ATGTCCAACGCCACCGTGCCGGAGTCCGACTCCGGTGGCTCCAATTCTTCCTCCTCCACTTCCTCCTCTTCCTTTTCAACTTCATGTTCCATCTCCTCTCCAACGAAAAAAGCCGGTGGCTGCCGACCAAAGCGCGCGCGGGAAATCAGCACCAACAGTCGCCACCCAATTTACCGCGGCGTCCGAATGAGGGCGTGGGGCAAATGGGTGTCGGAAATTAGAGAGCCAAAGAAGAAGAGCCGGATCTGGCTCGGCACCTTCGCCACACCCGACATGGCAGCACGTGCCCACGACGTAGCCGCCCTCACCATCAAAGGCAACTCCGCTATCCTCAACTTCCCCGAACTCGCCGCGTCACTCCCACGCCCCGCTTCCTCCTCCCCCCGCGACGTTCAATCCGCCGCCGCTCTCGCCGCCTCAATGCAACTCCCTAACGCCCCACCTCCACCCCCACCGCTACCACCACCCTCATCGCCTCCATTTACATCATCATCGGAGTTGGAAGAGTCGACGCCGGAGGAACTGAGTGAAATCGTAGTGCTGCCGAGTTTGGGAACGAGTTACGAGGAATCATCCGAGTCAGTGACCGAGTTAGTGTTCGACGAGTGGCAATATAGTTATGGGCTTTGGGATCAAAATCAAAGCTCAAAAGAAGAAGAAGAAGAAGCTTATGAGTTCTTCATAGATCAAATGGCAATGGCGGAAAAATCATTTCAAGCTTTACCCTTCTCGTGGTAA 738 55.56 MSNATVPESDSGGSNSSSSTSSSSFSTSCSISSPTKKAGGCRPKRAREISTNSRHPIYRGVRMRAWGKWVSEIREPKKKSRIWLGTFATPDMAARAHDVAALTIKGNSAILNFPELAASLPRPASSSPRDVQSAAALAASMQLPNAPPPPPPLPPPSSPPFTSSSELEESTPEELSEIVVLPSLGTSYEESSESVTELVFDEWQYSYGLWDQNQSSKEEEEEAYEFFIDQMAMAEKSFQALPFSW 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10234374 10235111 + CmaCh05G013580.1 Cma05g01358 295476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01358 245 MobiDBLite consensus disorder prediction 1 35 - -
Cma05g01358 245 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 241 - -
Cma05g01358 245 Gene3D AP2/ERF domain 57 115 IPR036955 GO:0003700|GO:0006355
Cma05g01358 245 MobiDBLite consensus disorder prediction 143 161 - -
Cma05g01358 245 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Cma05g01358 245 CDD AP2 56 116 IPR001471 GO:0003700|GO:0006355
Cma05g01358 245 MobiDBLite consensus disorder prediction 142 175 - -
Cma05g01358 245 SUPERFAMILY DNA-binding domain 57 115 IPR016177 GO:0003677
Cma05g01358 245 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 15 241 - -
Cma05g01358 245 MobiDBLite consensus disorder prediction 1 53 - -
Cma05g01358 245 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Cma05g01358 245 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Cma05g01358 245 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
Cma05g01358 245 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01358 Cma-Chr5:10234374 Cma09g00635 Cma-Chr9:3002095 6.13E-52 dispersed
Cma06g00796 Cma-Chr6:4176468 Cma05g01358 Cma-Chr5:10234374 1.78E-45 dispersed
Cma08g00154 Cma-Chr8:842741 Cma05g01358 Cma-Chr5:10234374 5.82E-39 dispersed
Cma09g01258 Cma-Chr9:8466778 Cma05g01358 Cma-Chr5:10234374 8.86E-33 dispersed
Cma15g01197 Cma-Chr15:7581626 Cma05g01358 Cma-Chr5:10234374 1.26E-32 dispersed
Cma09g01204 Cma-Chr9:7929262 Cma05g01358 Cma-Chr5:10234374 2.23E-27 transposed
Cma10g00659 Cma-Chr10:2980345 Cma05g01358 Cma-Chr5:10234374 1.06E-72 wgd
Cma11g00638 Cma-Chr11:3083677 Cma05g01358 Cma-Chr5:10234374 3.70E-73 wgd
Cma12g01265 Cma-Chr12:9873149 Cma05g01358 Cma-Chr5:10234374 2.05E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35116 PF00847 AP2 1.30E-12 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01358 K09286 - csv:101212945 294.278