Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma05g01358 | ATGTCCAACGCCACCGTGCCGGAGTCCGACTCCGGTGGCTCCAATTCTTCCTCCTCCACTTCCTCCTCTTCCTTTTCAACTTCATGTTCCATCTCCTCTCCAACGAAAAAAGCCGGTGGCTGCCGACCAAAGCGCGCGCGGGAAATCAGCACCAACAGTCGCCACCCAATTTACCGCGGCGTCCGAATGAGGGCGTGGGGCAAATGGGTGTCGGAAATTAGAGAGCCAAAGAAGAAGAGCCGGATCTGGCTCGGCACCTTCGCCACACCCGACATGGCAGCACGTGCCCACGACGTAGCCGCCCTCACCATCAAAGGCAACTCCGCTATCCTCAACTTCCCCGAACTCGCCGCGTCACTCCCACGCCCCGCTTCCTCCTCCCCCCGCGACGTTCAATCCGCCGCCGCTCTCGCCGCCTCAATGCAACTCCCTAACGCCCCACCTCCACCCCCACCGCTACCACCACCCTCATCGCCTCCATTTACATCATCATCGGAGTTGGAAGAGTCGACGCCGGAGGAACTGAGTGAAATCGTAGTGCTGCCGAGTTTGGGAACGAGTTACGAGGAATCATCCGAGTCAGTGACCGAGTTAGTGTTCGACGAGTGGCAATATAGTTATGGGCTTTGGGATCAAAATCAAAGCTCAAAAGAAGAAGAAGAAGAAGCTTATGAGTTCTTCATAGATCAAATGGCAATGGCGGAAAAATCATTTCAAGCTTTACCCTTCTCGTGGTAA | 738 | 55.56 | MSNATVPESDSGGSNSSSSTSSSSFSTSCSISSPTKKAGGCRPKRAREISTNSRHPIYRGVRMRAWGKWVSEIREPKKKSRIWLGTFATPDMAARAHDVAALTIKGNSAILNFPELAASLPRPASSSPRDVQSAAALAASMQLPNAPPPPPPLPPPSSPPFTSSSELEESTPEELSEIVVLPSLGTSYEESSESVTELVFDEWQYSYGLWDQNQSSKEEEEEAYEFFIDQMAMAEKSFQALPFSW | 245 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 10234374 | 10235111 | + | CmaCh05G013580.1 | Cma05g01358 | 295476 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma05g01358 | 245 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Cma05g01358 | 245 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 15 | 241 | - | - | |
Cma05g01358 | 245 | Gene3D | AP2/ERF domain | 57 | 115 | IPR036955 | GO:0003700|GO:0006355 | |
Cma05g01358 | 245 | MobiDBLite | consensus disorder prediction | 143 | 161 | - | - | |
Cma05g01358 | 245 | SMART | rav1_2 | 57 | 120 | IPR001471 | GO:0003700|GO:0006355 | |
Cma05g01358 | 245 | CDD | AP2 | 56 | 116 | IPR001471 | GO:0003700|GO:0006355 | |
Cma05g01358 | 245 | MobiDBLite | consensus disorder prediction | 142 | 175 | - | - | |
Cma05g01358 | 245 | SUPERFAMILY | DNA-binding domain | 57 | 115 | IPR016177 | GO:0003677 | |
Cma05g01358 | 245 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE | 15 | 241 | - | - | |
Cma05g01358 | 245 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - | |
Cma05g01358 | 245 | PRINTS | Ethylene responsive element binding protein signature | 58 | 69 | IPR001471 | GO:0003700|GO:0006355 | |
Cma05g01358 | 245 | PRINTS | Ethylene responsive element binding protein signature | 80 | 96 | IPR001471 | GO:0003700|GO:0006355 | |
Cma05g01358 | 245 | Pfam | AP2 domain | 56 | 106 | IPR001471 | GO:0003700|GO:0006355 | |
Cma05g01358 | 245 | ProSiteProfiles | AP2/ERF domain profile. | 57 | 114 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g01358 | Cma-Chr5:10234374 | Cma09g00635 | Cma-Chr9:3002095 | 6.13E-52 | dispersed | |
Cma06g00796 | Cma-Chr6:4176468 | Cma05g01358 | Cma-Chr5:10234374 | 1.78E-45 | dispersed | |
Cma08g00154 | Cma-Chr8:842741 | Cma05g01358 | Cma-Chr5:10234374 | 5.82E-39 | dispersed | |
Cma09g01258 | Cma-Chr9:8466778 | Cma05g01358 | Cma-Chr5:10234374 | 8.86E-33 | dispersed | |
Cma15g01197 | Cma-Chr15:7581626 | Cma05g01358 | Cma-Chr5:10234374 | 1.26E-32 | dispersed | |
Cma09g01204 | Cma-Chr9:7929262 | Cma05g01358 | Cma-Chr5:10234374 | 2.23E-27 | transposed | |
Cma10g00659 | Cma-Chr10:2980345 | Cma05g01358 | Cma-Chr5:10234374 | 1.06E-72 | wgd | |
Cma11g00638 | Cma-Chr11:3083677 | Cma05g01358 | Cma-Chr5:10234374 | 3.70E-73 | wgd | |
Cma12g01265 | Cma-Chr12:9873149 | Cma05g01358 | Cma-Chr5:10234374 | 2.05E-91 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35116 | PF00847 | AP2 | 1.30E-12 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma05g01358 | K09286 | - | csv:101212945 | 294.278 |