Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma05g01373 | ATGTCGTGGCAAGTTTACGTCGACGATCATTTGATGTGCGATATTGAGGGCAATCACCTCACATCTGCAGCCATTATCGGCCATGACGGCAGCGTTTGGGCCCAAAGCGAAACTTTCCCCAAGTTCAAGCCTGAAGAAATTGCTGCTATCATGAATGACTTCAATGAGCCCGGGACGCTTGCTCCAACTGGTTTGTATCTTGGTGGCTCAAAGTATATGGTAATCCAAGGGGAGCCTGGAGCTGTTATTCGTGGGAAGAAGGGCCCAGGTGGGGTTACTGTTAAGAAGACTGGTCTGGCTCTAGTCATTGGCATCTATGATGAACCAATGACTCCTGTTCTTGGTTTGGTTGCTTTTCAGTCTCTAGCAGATTATGCTAAAGAGTTGATTTCAGATTGTAAGGAACTTGATGTCGATTTCTCATTGGAAGATCTTGAAACTGTGAATGTTATCGGGAAAGGAAGTGGTGGTGTAGTGCAACTTGTTCGACACAAGTGGGTTGGAAAACTTTTTGCCTTAAAGGTGATCCAGATGAACATACAAGAGGATATCCGTAAACAGATCGTGCAGGAACTGAAAATAAATCAAGCAGCACAATGTCCACAAATAGTGGTCTGTTACCATTCTTTCTACCATAATGGTGCCATTTCTCTGGTGCTAGAATACATGGATCGTGGTTCTTTAGCCGACATAGTCAGACAAGTCCAAACAATTCTGGAACCATATCTTGCAGTTGTTTGTAAACAGGTTCTACAAGGTCTTGTTTATTTGCATCATGAGAGACATGTTATACACAGAGACATCAAGCCATCCAATCTACTCTTGAACCATAAAGGGGAGGTCAAAATCACTGATTTTGGAGTAAGTGCAATGCTAGCTAGTTCTATGGGTCAGAGAGACACATTTGTGGGAACTTACAATTACATGTCGCCTGAGCGAATTAGCGGCGGAACATATGACTACAGCAGTGATATATGGAGCTTGGGCATGGTTGTACTTGAATGTGCCATTGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTGCTTGAGGCAATTGTAGCAAAGCCGCCGCCTTCTGCTCCACCGGATCAATTCTCCCCCGAGTTCTGTTCCTTCGTATCCGCTTGCATTAAAAAGGACCCTAAAGAAAGATCAGCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGACGATAAAGACATCGATCTTGGGATTCTCGTAGGCAGCTTGGATCCTCCTGTAAGTTTTCCTAGATAA | 1293 | 43.7 | MSWQVYVDDHLMCDIEGNHLTSAAIIGHDGSVWAQSETFPKFKPEEIAAIMNDFNEPGTLAPTGLYLGGSKYMVIQGEPGAVIRGKKGPGGVTVKKTGLALVIGIYDEPMTPVLGLVAFQSLADYAKELISDCKELDVDFSLEDLETVNVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPQIVVCYHSFYHNGAISLVLEYMDRGSLADIVRQVQTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLLNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGMVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSACIKKDPKERSASLDLLNHPFIKKFDDKDIDLGILVGSLDPPVSFPR | 430 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 10326136 | 10332515 | - | CmaCh05G013730.1 | Cma05g01373 | 295491 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma05g01373 | 430 | Gene3D | Dynein light chain 2a, cytoplasmic | 1 | 124 | - | - | |
Cma05g01373 | 430 | PRINTS | Plant profilin signature | 52 | 66 | IPR005455 | GO:0003779 | |
Cma05g01373 | 430 | PRINTS | Plant profilin signature | 84 | 99 | IPR005455 | GO:0003779 | |
Cma05g01373 | 430 | PRINTS | Plant profilin signature | 27 | 40 | IPR005455 | GO:0003779 | |
Cma05g01373 | 430 | PRINTS | Plant profilin signature | 71 | 80 | IPR005455 | GO:0003779 | |
Cma05g01373 | 430 | PRINTS | Plant profilin signature | 104 | 117 | IPR005455 | GO:0003779 | |
Cma05g01373 | 430 | PRINTS | Plant profilin signature | 1 | 14 | IPR005455 | GO:0003779 | |
Cma05g01373 | 430 | SMART | prof_2 | 1 | 131 | IPR005455 | GO:0003779 | |
Cma05g01373 | 430 | SUPERFAMILY | Profilin (actin-binding protein) | 2 | 125 | IPR036140 | - | |
Cma05g01373 | 430 | Gene3D | Phosphorylase Kinase; domain 1 | 125 | 224 | - | - | |
Cma05g01373 | 430 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 263 | 275 | IPR008271 | GO:0004672|GO:0006468 | |
Cma05g01373 | 430 | CDD | PROF | 2 | 125 | IPR005455 | GO:0003779 | |
Cma05g01373 | 430 | Pfam | Protein kinase domain | 146 | 405 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma05g01373 | 430 | PANTHER | MITOGEN-ACTIVATED KINASE KINASE KINASE | 125 | 429 | - | - | |
Cma05g01373 | 430 | ProSiteProfiles | Protein kinase domain profile. | 145 | 405 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma05g01373 | 430 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 | 125 | 429 | - | - | |
Cma05g01373 | 430 | SMART | serkin_6 | 145 | 405 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma05g01373 | 430 | Gene3D | Transferase(Phosphotransferase) domain 1 | 226 | 419 | - | - | |
Cma05g01373 | 430 | ProSitePatterns | Profilin signature. | 1 | 8 | IPR027310 | GO:0003779 | |
Cma05g01373 | 430 | SUPERFAMILY | Protein kinase-like (PK-like) | 143 | 419 | IPR011009 | - | |
Cma05g01373 | 430 | Pfam | Profilin | 1 | 125 | IPR005455 | GO:0003779 | |
Cma05g01373 | 430 | ProSitePatterns | Protein kinases ATP-binding region signature. | 151 | 174 | IPR017441 | GO:0005524 | |
Cma05g01373 | 430 | PRINTS | Profilin signature | 3 | 12 | IPR005455 | GO:0003779 | |
Cma05g01373 | 430 | PRINTS | Profilin signature | 100 | 113 | IPR005455 | GO:0003779 | |
Cma05g01373 | 430 | PRINTS | Profilin signature | 21 | 30 | IPR005455 | GO:0003779 | |
Cma05g01373 | 430 | PRINTS | Profilin signature | 40 | 60 | IPR005455 | GO:0003779 | |
Cma05g01373 | 430 | PRINTS | Profilin signature | 64 | 78 | IPR005455 | GO:0003779 | |
Cma05g01373 | 430 | CDD | PKc_MAPKK_plant_like | 143 | 409 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma05g01373 | Cma12g01275 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g01373 | Cma-Chr5:10326136 | Cma10g00741 | Cma-Chr10:3371796 | 5.28E-143 | dispersed | |
Cma18g00086 | Cma-Chr18:383549 | Cma05g01373 | Cma-Chr5:10326136 | 4.68E-67 | dispersed | |
Cma05g01373 | Cma-Chr5:10326136 | Cma05g01374 | Cma-Chr5:10333305 | 7.38E-61 | tandem | |
Cma12g01275 | Cma-Chr12:9924976 | Cma05g01373 | Cma-Chr5:10326136 | 0 | transposed | |
Cma14g00668 | Cma-Chr14:3361622 | Cma05g01373 | Cma-Chr5:10326136 | 6.60E-78 | transposed | |
Cma01g00091 | Cma-Chr1:420491 | Cma05g01373 | Cma-Chr5:10326136 | 9.33E-48 | wgd | |
Cma12g01274 | Cma-Chr12:9918513 | Cma05g01373 | Cma-Chr5:10326136 | 2.56E-57 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68604 | PF00069 | Pkinase | 7.10E-65 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma05g01373 | K04368 | - | csv:101218848 | 574.704 |