Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01373 ATGTCGTGGCAAGTTTACGTCGACGATCATTTGATGTGCGATATTGAGGGCAATCACCTCACATCTGCAGCCATTATCGGCCATGACGGCAGCGTTTGGGCCCAAAGCGAAACTTTCCCCAAGTTCAAGCCTGAAGAAATTGCTGCTATCATGAATGACTTCAATGAGCCCGGGACGCTTGCTCCAACTGGTTTGTATCTTGGTGGCTCAAAGTATATGGTAATCCAAGGGGAGCCTGGAGCTGTTATTCGTGGGAAGAAGGGCCCAGGTGGGGTTACTGTTAAGAAGACTGGTCTGGCTCTAGTCATTGGCATCTATGATGAACCAATGACTCCTGTTCTTGGTTTGGTTGCTTTTCAGTCTCTAGCAGATTATGCTAAAGAGTTGATTTCAGATTGTAAGGAACTTGATGTCGATTTCTCATTGGAAGATCTTGAAACTGTGAATGTTATCGGGAAAGGAAGTGGTGGTGTAGTGCAACTTGTTCGACACAAGTGGGTTGGAAAACTTTTTGCCTTAAAGGTGATCCAGATGAACATACAAGAGGATATCCGTAAACAGATCGTGCAGGAACTGAAAATAAATCAAGCAGCACAATGTCCACAAATAGTGGTCTGTTACCATTCTTTCTACCATAATGGTGCCATTTCTCTGGTGCTAGAATACATGGATCGTGGTTCTTTAGCCGACATAGTCAGACAAGTCCAAACAATTCTGGAACCATATCTTGCAGTTGTTTGTAAACAGGTTCTACAAGGTCTTGTTTATTTGCATCATGAGAGACATGTTATACACAGAGACATCAAGCCATCCAATCTACTCTTGAACCATAAAGGGGAGGTCAAAATCACTGATTTTGGAGTAAGTGCAATGCTAGCTAGTTCTATGGGTCAGAGAGACACATTTGTGGGAACTTACAATTACATGTCGCCTGAGCGAATTAGCGGCGGAACATATGACTACAGCAGTGATATATGGAGCTTGGGCATGGTTGTACTTGAATGTGCCATTGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTGCTTGAGGCAATTGTAGCAAAGCCGCCGCCTTCTGCTCCACCGGATCAATTCTCCCCCGAGTTCTGTTCCTTCGTATCCGCTTGCATTAAAAAGGACCCTAAAGAAAGATCAGCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGACGATAAAGACATCGATCTTGGGATTCTCGTAGGCAGCTTGGATCCTCCTGTAAGTTTTCCTAGATAA 1293 43.7 MSWQVYVDDHLMCDIEGNHLTSAAIIGHDGSVWAQSETFPKFKPEEIAAIMNDFNEPGTLAPTGLYLGGSKYMVIQGEPGAVIRGKKGPGGVTVKKTGLALVIGIYDEPMTPVLGLVAFQSLADYAKELISDCKELDVDFSLEDLETVNVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPQIVVCYHSFYHNGAISLVLEYMDRGSLADIVRQVQTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLLNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGMVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSACIKKDPKERSASLDLLNHPFIKKFDDKDIDLGILVGSLDPPVSFPR 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10326136 10332515 - CmaCh05G013730.1 Cma05g01373 295491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01373 430 Gene3D Dynein light chain 2a, cytoplasmic 1 124 - -
Cma05g01373 430 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Cma05g01373 430 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Cma05g01373 430 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Cma05g01373 430 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Cma05g01373 430 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Cma05g01373 430 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Cma05g01373 430 SMART prof_2 1 131 IPR005455 GO:0003779
Cma05g01373 430 SUPERFAMILY Profilin (actin-binding protein) 2 125 IPR036140 -
Cma05g01373 430 Gene3D Phosphorylase Kinase; domain 1 125 224 - -
Cma05g01373 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Cma05g01373 430 CDD PROF 2 125 IPR005455 GO:0003779
Cma05g01373 430 Pfam Protein kinase domain 146 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g01373 430 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 125 429 - -
Cma05g01373 430 ProSiteProfiles Protein kinase domain profile. 145 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g01373 430 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 125 429 - -
Cma05g01373 430 SMART serkin_6 145 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g01373 430 Gene3D Transferase(Phosphotransferase) domain 1 226 419 - -
Cma05g01373 430 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Cma05g01373 430 SUPERFAMILY Protein kinase-like (PK-like) 143 419 IPR011009 -
Cma05g01373 430 Pfam Profilin 1 125 IPR005455 GO:0003779
Cma05g01373 430 ProSitePatterns Protein kinases ATP-binding region signature. 151 174 IPR017441 GO:0005524
Cma05g01373 430 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Cma05g01373 430 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Cma05g01373 430 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Cma05g01373 430 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Cma05g01373 430 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Cma05g01373 430 CDD PKc_MAPKK_plant_like 143 409 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g01373 Cma12g01275 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01373 Cma-Chr5:10326136 Cma10g00741 Cma-Chr10:3371796 5.28E-143 dispersed
Cma18g00086 Cma-Chr18:383549 Cma05g01373 Cma-Chr5:10326136 4.68E-67 dispersed
Cma05g01373 Cma-Chr5:10326136 Cma05g01374 Cma-Chr5:10333305 7.38E-61 tandem
Cma12g01275 Cma-Chr12:9924976 Cma05g01373 Cma-Chr5:10326136 0 transposed
Cma14g00668 Cma-Chr14:3361622 Cma05g01373 Cma-Chr5:10326136 6.60E-78 transposed
Cma01g00091 Cma-Chr1:420491 Cma05g01373 Cma-Chr5:10326136 9.33E-48 wgd
Cma12g01274 Cma-Chr12:9918513 Cma05g01373 Cma-Chr5:10326136 2.56E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68604 PF00069 Pkinase 7.10E-65 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01373 K04368 - csv:101218848 574.704