Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01374 ATGTCGTGGCAAACATATGTCGATGACCATTTGATGTGCGACATTGATGGCCAAGGCCAGCACCTCACCGCCGCTGCCATTATTGGCCACGATGGCAGCGTCTGGGCTCAGAGTACTTCATTTCCTCAGTGCAAGCCTGAGGAGATCACTGGTATCATGAAGGATTTTGATGAACCTGGTTATCTTGCACCTACTGGATTACACCTTGCAGGTACAAAGTACATGGTTATCCAAGGCGAGCCTGGAGCAGTCATCCGTGGAAAGAAGGGGTCTGGAGGAATTACCATAAAGAAGACTGGGCAGGCTCTAGTTTTTGGCATTTATGAAGAACCTGTTACTCCAGGACAGTGCAACATGGTCGTTGAGAGGCTTGGTGATTACCTCGTCGATCAGGGTCTGTAG 402 49.5 MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSTSFPQCKPEEITGIMKDFDEPGYLAPTGLHLAGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLVDQGL 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10333305 10334985 - CmaCh05G013740.1 Cma05g01374 295492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01374 133 SMART prof_2 1 133 IPR005455 GO:0003779
Cma05g01374 133 PANTHER PROFILIN 1 133 - -
Cma05g01374 133 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Cma05g01374 133 PANTHER PROFILIN 1 133 IPR005455 GO:0003779
Cma05g01374 133 SUPERFAMILY Profilin (actin-binding protein) 2 132 IPR036140 -
Cma05g01374 133 Pfam Profilin 1 132 IPR005455 GO:0003779
Cma05g01374 133 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
Cma05g01374 133 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Cma05g01374 133 PRINTS Profilin signature 23 32 IPR005455 GO:0003779
Cma05g01374 133 PRINTS Profilin signature 42 62 IPR005455 GO:0003779
Cma05g01374 133 PRINTS Profilin signature 66 80 IPR005455 GO:0003779
Cma05g01374 133 PRINTS Profilin signature 102 115 IPR005455 GO:0003779
Cma05g01374 133 PRINTS Profilin signature 115 132 IPR005455 GO:0003779
Cma05g01374 133 CDD PROF 2 132 IPR005455 GO:0003779
Cma05g01374 133 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Cma05g01374 133 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779
Cma05g01374 133 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779
Cma05g01374 133 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779
Cma05g01374 133 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779
Cma05g01374 133 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779
Cma05g01374 133 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01374 Cma-Chr5:10333305 Cma12g01274 Cma-Chr12:9918513 2.85E-74 dispersed
Cma05g01373 Cma-Chr5:10326136 Cma05g01374 Cma-Chr5:10333305 7.38E-61 tandem
Cma14g01287 Cma-Chr14:10164737 Cma05g01374 Cma-Chr5:10333305 9.84E-70 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01374 K05759 - twl:120006331 257.299