Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01379 ATGAAGATCGTGGAATTGGAAGATGCTGGGAATGATCGGGAAAATGAAATGGGTAGCGGTCAGATTGTGAAGGTCGATGCCAAAAGAGCGTTGGTTGGGGCTGGGGCTCGAATCCTGTTTTACCCTACCCTTCTGTATAACGTTCTTCGGAACAAAATGGAGGCTGAATTCAGATGGTGGGATGAAATCGATCAGTTTCTTTTGCTCGGTGCAGTGCCGTTCCCCAAAGACGTGCCGAGGTTGAAGGAGCTCGGTGTCGGCGGTGTCATCACTCTCAATGAACCTTATGAAACATTAGTTCCATCTTCGTTGTATTATCGCTATGGAATCGACCATTTAAAGATCCCGACGAGAGATTATTGTTTTGCTCCGAAATTTTCTGACATTAGCCGAGCTGTGGACTTCATTCACAGAAACGCGATGTGTGGTAAAACAACGTACGTCCATTGTAAAGCGGGACGAGGAAGGAGCACGACCATTGTGCTTTGCTATTTGGTCAAATATAAGCACATGACCCCATCTGCTGCGCTGGAATACGTGCGCTCGAGAAGACCACGGGTGTTGCTCGCCCCCTCACAGTGGGAGGCTGTTCAAGAATACAGCAACCGGCGACCCGTTGCAAGTTCTAGCCCTCCCTCAGGAGGAGATGCAGTCCTGATTACGAAAGACGATCTAGAAGGATATCACGGTACGTGCATCGACAGTGCAGGTAGAGAACTTGCAGTTGGCCCTTGGATGGGTAAGTCAAAGCCAATGATAGCAAGGTTGTCCTGCCTCTTTTCATCGTTGATAGTTCATGGCAGCAGCGGATCTCTCATGAAGCGTCTGCCGGTGTCGGAGGCTCGTGCTTGTTGA 855 49.47 MKIVELEDAGNDRENEMGSGQIVKVDAKRALVGAGARILFYPTLLYNVLRNKMEAEFRWWDEIDQFLLLGAVPFPKDVPRLKELGVGGVITLNEPYETLVPSSLYYRYGIDHLKIPTRDYCFAPKFSDISRAVDFIHRNAMCGKTTYVHCKAGRGRSTTIVLCYLVKYKHMTPSAALEYVRSRRPRVLLAPSQWEAVQEYSNRRPVASSSPPSGGDAVLITKDDLEGYHGTCIDSAGRELAVGPWMGKSKPMIARLSCLFSSLIVHGSSGSLMKRLPVSEARAC 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10345158 10347626 + CmaCh05G013790.1 Cma05g01379 295497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01379 284 CDD PTPMT1 59 203 IPR044596 GO:0004721
Cma05g01379 284 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 206 IPR020422 GO:0006470|GO:0008138
Cma05g01379 284 Gene3D Protein tyrosine phosphatase superfamily 59 205 IPR029021 -
Cma05g01379 284 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 195 IPR000387 GO:0016311|GO:0016791
Cma05g01379 284 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Cma05g01379 284 PANTHER - 1 284 - -
Cma05g01379 284 PANTHER OS01G0739200 PROTEIN 1 284 - -
Cma05g01379 284 Pfam Dual specificity phosphatase, catalytic domain 103 202 IPR000340 GO:0008138|GO:0016311
Cma05g01379 284 SMART dsp_5 62 203 IPR020422 GO:0006470|GO:0008138
Cma05g01379 284 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 52 201 IPR029021 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g01379 Cma12g01280 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01379 Cma-Chr5:10345158 Cma06g00800 Cma-Chr6:4205467 4.06E-99 dispersed
Cma12g01280 Cma-Chr12:9944620 Cma05g01379 Cma-Chr5:10345158 9.65E-136 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01379 - - csv:101220751 536.569