Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma05g01403 | ATGACATCAGTGGCGGTTGCCATTAACGGCGTTCGCGGCGGCAAAGGCGGTGGCGGAAGCCGCCGCGCCGTCAGATGGGCTGTGGAGAATCTGTTGCCAACCGCCGATCGGTTCATATTGGTTCATGTTATGCCCAAAATCACCTCCATCCCCACCCCAATGGGGGATCTTGTGGCGGTCTCGGAGCTTGACGCAGATGTAGTAGCGCTTTATGTTCATGATGTAAAACAGAAATATGAACAGATTTTTGTTCCTTTCAAGAAGATGTGTAGAAGAGAGAAGTTTCTTCTACTGGTTGAAACTTTGATTCTGGAGGATGATAATCCCGCCACTGCACTTATGAGATATGCATCTGAATCTGGGATTAAACACTTGGTTTTGGGTTCTTGTTTTAGGACTTGCATAGCAAGGAGGCTGAAAGGGGATTCAGTACCCTCTGCTATTATGAGAGCTGCTTCTAGGTGTTTTGATATCTATGTTATATATAGGAGAAGAGTCATTACACGAACGGCTACTACTGCCCCATCTAGTGAAACTGACTCGAGGCAGTGGATGCTTGGTGATACCGATTACTATAGGGGTTCGAGTACAGTTAGTGAAAAATCATTTGGAACGCTGTCTTCTTCTTCCATGTCGAATGTTCATCGAAGGGGCGATAGCCTCGAAGTTAATTCTACCGAGCAACTGAACTCTTTGAGTACTCTAACTGAGGAGGAAGATATGCAGGCTGAAGTTGAATCGCTGCAGCTAGAATTGGAGAGTACTGTTTCCTTGTACAAACAAGCTTGTGAAGAACTTGTTCATGCTCAGAAGAAGGTTCAGTCACTTACATCCGAATGCCTTGAAGAATCAAGAAAAGTGAACGCTGCATTGGAAAGGGAACAAGCTTTGAGGAAAGTGGCTGCTGAAGAGAAAGCAAAGCACTTGGAAGCCATTAAGGAGCTTGAGGAGGCAAAGGACTCACTAGCTAAAGAAGCTTATGAGAGGCAGCTAGCTGAGCTTAATGCCTTAAAGGAGTCCTTGGAGAAGAAGAAAATTGTTGATACTCTTCTGACTAATGATAGGAGGTACAGAAGGTATACTACAGCCGAAATAGAAGCTGCGACGAATTTCTTCGATGAAGTTAACGTGATCGGTGAGGGCGGATATGGGAAAGTCTACGTATGCAGTCTCGATCATACCCCGGTAGCCATTAAGGTCTTTCGACACGACATATTCGAGAACAAGGACGAGTTTCTCAAAGAGGTTGAAATTCTGAGCCAGATACGCCATCCACACGTGGTTTTACTGCTCGGAGCTTGCCCCGAGCGAGGTTGCTTGATTTACGAATACATGGAAAATGGAAGCTTAGATGATCATATCTTGCTCCGGAATGGAAAACCTCCCCTCCCGTGGTCTATTAGACTTAGAATAGTTTTTCAAGTAGCGTCTGGGCTTGCATTCTTACACAATTCAAAGCCAGAGCCTATTATTCATAGAGATCTCAAACCGGGTAATATCTTACTTGATAGAAACTTTGTAAGCAAAATCTCAGACGTTGGAATGGCTAAGATCATCGGCGATATCGTGCCTGACAATGTGACGGAGTACCGAAACACCATTCTTGCTGGGACTCTGCATTACATGGATCCTGAATATCAGAGAACTGGCACACTCCGACCGAAGTCGGATACGTATGCGCTCGGAGTAACAATTCTGCAGTTGTTGACCGGGCGGCAGCCCCACGGTCTTCTTCTGGCTGTCGAGAACTCTATCGCAAGTGGCTCGCTTGCAGATATTCTAGATAAGTCGATTACTGACTGGCCTCTAGCTGAAGCTGAGGAGCTAGCTGGACTGGCACTGAAGTGCTTGAAGCTTAGATGCAGGGATAGGCCAGATCTTGAAACTGAAGTTCTTCCAGTCCTTAAAAGGCTCGTTGATTTTGCAGATGCGTTTCGGAAAGGTGCTGCCAATCCCCCAAGCCACTACTTCTGCCCAATCCTCCAGGAAGTAATGGAGGATCCTTATATAGCGGCCGACGGTTTTACTTACGAGTACGAAGCCATTAAAGCATGGCTCGAGAAATACGACGTATCGCCTGTGACGAAGCTTAAGCTCCAGCATTCTATGTTTATTCCTAACTATACTCTGCGTTCTGCCATACAAGAGTGGAGGATTGAATTTCATGTTCTTGAAAAATTCTCCCAATTAATCCGGGATCTCTCAAACATTCATACAAACTTACCTCACGCCTCTATAATGCACTCATAA | 2250 | 45.6 | MTSVAVAINGVRGGKGGGGSRRAVRWAVENLLPTADRFILVHVMPKITSIPTPMGDLVAVSELDADVVALYVHDVKQKYEQIFVPFKKMCRREKFLLLVETLILEDDNPATALMRYASESGIKHLVLGSCFRTCIARRLKGDSVPSAIMRAASRCFDIYVIYRRRVITRTATTAPSSETDSRQWMLGDTDYYRGSSTVSEKSFGTLSSSSMSNVHRRGDSLEVNSTEQLNSLSTLTEEEDMQAEVESLQLELESTVSLYKQACEELVHAQKKVQSLTSECLEESRKVNAALEREQALRKVAAEEKAKHLEAIKELEEAKDSLAKEAYERQLAELNALKESLEKKKIVDTLLTNDRRYRRYTTAEIEAATNFFDEVNVIGEGGYGKVYVCSLDHTPVAIKVFRHDIFENKDEFLKEVEILSQIRHPHVVLLLGACPERGCLIYEYMENGSLDDHILLRNGKPPLPWSIRLRIVFQVASGLAFLHNSKPEPIIHRDLKPGNILLDRNFVSKISDVGMAKIIGDIVPDNVTEYRNTILAGTLHYMDPEYQRTGTLRPKSDTYALGVTILQLLTGRQPHGLLLAVENSIASGSLADILDKSITDWPLAEAEELAGLALKCLKLRCRDRPDLETEVLPVLKRLVDFADAFRKGAANPPSHYFCPILQEVMEDPYIAADGFTYEYEAIKAWLEKYDVSPVTKLKLQHSMFIPNYTLRSAIQEWRIEFHVLEKFSQLIRDLSNIHTNLPHASIMHS | 749 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 10466879 | 10476671 | + | CmaCh05G014030.1 | Cma05g01403 | 295521 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma05g01403 | 749 | Coils | Coil | 298 | 347 | - | - | |
Cma05g01403 | 749 | PANTHER | OS02G0152300 PROTEIN | 2 | 206 | - | - | |
Cma05g01403 | 749 | Pfam | Universal stress protein family | 19 | 152 | IPR006016 | - | |
Cma05g01403 | 749 | SUPERFAMILY | Protein kinase-like (PK-like) | 355 | 628 | IPR011009 | - | |
Cma05g01403 | 749 | Gene3D | HUPs | 3 | 155 | IPR014729 | - | |
Cma05g01403 | 749 | SUPERFAMILY | RING/U-box | 649 | 721 | - | - | |
Cma05g01403 | 749 | Gene3D | Phosphorylase Kinase; domain 1 | 349 | 444 | - | - | |
Cma05g01403 | 749 | CDD | STK_N | 3 | 161 | - | - | |
Cma05g01403 | 749 | SMART | Ubox_2 | 655 | 717 | IPR003613 | GO:0004842|GO:0016567 | |
Cma05g01403 | 749 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 34 | 213 | 720 | - | - | |
Cma05g01403 | 749 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 34 | 2 | 206 | - | - | |
Cma05g01403 | 749 | Coils | Coil | 259 | 279 | - | - | |
Cma05g01403 | 749 | SUPERFAMILY | Adenine nucleotide alpha hydrolases-like | 17 | 143 | - | - | |
Cma05g01403 | 749 | PANTHER | OS02G0152300 PROTEIN | 213 | 720 | - | - | |
Cma05g01403 | 749 | Pfam | Protein tyrosine and serine/threonine kinase | 376 | 628 | IPR001245 | GO:0004672|GO:0006468 | |
Cma05g01403 | 749 | Gene3D | Transferase(Phosphotransferase) domain 1 | 445 | 647 | - | - | |
Cma05g01403 | 749 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 490 | 502 | IPR008271 | GO:0004672|GO:0006468 | |
Cma05g01403 | 749 | ProSitePatterns | Protein kinases ATP-binding region signature. | 378 | 399 | IPR017441 | GO:0005524 | |
Cma05g01403 | 749 | ProSiteProfiles | Protein kinase domain profile. | 372 | 635 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma05g01403 | 749 | SMART | serkin_6 | 372 | 635 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma05g01403 | 749 | ProSiteProfiles | U-box domain profile. | 651 | 724 | IPR003613 | GO:0004842|GO:0016567 | |
Cma05g01403 | 749 | CDD | RING-Ubox_WDSUB1_like | 656 | 696 | - | - | |
Cma05g01403 | 749 | Pfam | U-box domain | 653 | 718 | IPR003613 | GO:0004842|GO:0016567 | |
Cma05g01403 | 749 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 651 | 722 | IPR013083 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma05g01403 | Cma12g00651 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00976 | Cma-Chr2:5829069 | Cma05g01403 | Cma-Chr5:10466879 | 2.01E-138 | dispersed | |
Cma05g01403 | Cma-Chr5:10466879 | Cma08g00785 | Cma-Chr8:4725043 | 2.29E-137 | dispersed | |
Cma18g01253 | Cma-Chr18:9779557 | Cma05g01403 | Cma-Chr5:10466879 | 8.82E-87 | dispersed | |
Cma05g01403 | Cma-Chr5:10466879 | Cma17g00710 | Cma-Chr17:5869007 | 1.45E-145 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68606 | PF07714 | PK_Tyr_Ser-Thr | 1.10E-39 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma05g01403 | - | - | cpep:111805862 | 1353.19 |