Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01403 ATGACATCAGTGGCGGTTGCCATTAACGGCGTTCGCGGCGGCAAAGGCGGTGGCGGAAGCCGCCGCGCCGTCAGATGGGCTGTGGAGAATCTGTTGCCAACCGCCGATCGGTTCATATTGGTTCATGTTATGCCCAAAATCACCTCCATCCCCACCCCAATGGGGGATCTTGTGGCGGTCTCGGAGCTTGACGCAGATGTAGTAGCGCTTTATGTTCATGATGTAAAACAGAAATATGAACAGATTTTTGTTCCTTTCAAGAAGATGTGTAGAAGAGAGAAGTTTCTTCTACTGGTTGAAACTTTGATTCTGGAGGATGATAATCCCGCCACTGCACTTATGAGATATGCATCTGAATCTGGGATTAAACACTTGGTTTTGGGTTCTTGTTTTAGGACTTGCATAGCAAGGAGGCTGAAAGGGGATTCAGTACCCTCTGCTATTATGAGAGCTGCTTCTAGGTGTTTTGATATCTATGTTATATATAGGAGAAGAGTCATTACACGAACGGCTACTACTGCCCCATCTAGTGAAACTGACTCGAGGCAGTGGATGCTTGGTGATACCGATTACTATAGGGGTTCGAGTACAGTTAGTGAAAAATCATTTGGAACGCTGTCTTCTTCTTCCATGTCGAATGTTCATCGAAGGGGCGATAGCCTCGAAGTTAATTCTACCGAGCAACTGAACTCTTTGAGTACTCTAACTGAGGAGGAAGATATGCAGGCTGAAGTTGAATCGCTGCAGCTAGAATTGGAGAGTACTGTTTCCTTGTACAAACAAGCTTGTGAAGAACTTGTTCATGCTCAGAAGAAGGTTCAGTCACTTACATCCGAATGCCTTGAAGAATCAAGAAAAGTGAACGCTGCATTGGAAAGGGAACAAGCTTTGAGGAAAGTGGCTGCTGAAGAGAAAGCAAAGCACTTGGAAGCCATTAAGGAGCTTGAGGAGGCAAAGGACTCACTAGCTAAAGAAGCTTATGAGAGGCAGCTAGCTGAGCTTAATGCCTTAAAGGAGTCCTTGGAGAAGAAGAAAATTGTTGATACTCTTCTGACTAATGATAGGAGGTACAGAAGGTATACTACAGCCGAAATAGAAGCTGCGACGAATTTCTTCGATGAAGTTAACGTGATCGGTGAGGGCGGATATGGGAAAGTCTACGTATGCAGTCTCGATCATACCCCGGTAGCCATTAAGGTCTTTCGACACGACATATTCGAGAACAAGGACGAGTTTCTCAAAGAGGTTGAAATTCTGAGCCAGATACGCCATCCACACGTGGTTTTACTGCTCGGAGCTTGCCCCGAGCGAGGTTGCTTGATTTACGAATACATGGAAAATGGAAGCTTAGATGATCATATCTTGCTCCGGAATGGAAAACCTCCCCTCCCGTGGTCTATTAGACTTAGAATAGTTTTTCAAGTAGCGTCTGGGCTTGCATTCTTACACAATTCAAAGCCAGAGCCTATTATTCATAGAGATCTCAAACCGGGTAATATCTTACTTGATAGAAACTTTGTAAGCAAAATCTCAGACGTTGGAATGGCTAAGATCATCGGCGATATCGTGCCTGACAATGTGACGGAGTACCGAAACACCATTCTTGCTGGGACTCTGCATTACATGGATCCTGAATATCAGAGAACTGGCACACTCCGACCGAAGTCGGATACGTATGCGCTCGGAGTAACAATTCTGCAGTTGTTGACCGGGCGGCAGCCCCACGGTCTTCTTCTGGCTGTCGAGAACTCTATCGCAAGTGGCTCGCTTGCAGATATTCTAGATAAGTCGATTACTGACTGGCCTCTAGCTGAAGCTGAGGAGCTAGCTGGACTGGCACTGAAGTGCTTGAAGCTTAGATGCAGGGATAGGCCAGATCTTGAAACTGAAGTTCTTCCAGTCCTTAAAAGGCTCGTTGATTTTGCAGATGCGTTTCGGAAAGGTGCTGCCAATCCCCCAAGCCACTACTTCTGCCCAATCCTCCAGGAAGTAATGGAGGATCCTTATATAGCGGCCGACGGTTTTACTTACGAGTACGAAGCCATTAAAGCATGGCTCGAGAAATACGACGTATCGCCTGTGACGAAGCTTAAGCTCCAGCATTCTATGTTTATTCCTAACTATACTCTGCGTTCTGCCATACAAGAGTGGAGGATTGAATTTCATGTTCTTGAAAAATTCTCCCAATTAATCCGGGATCTCTCAAACATTCATACAAACTTACCTCACGCCTCTATAATGCACTCATAA 2250 45.6 MTSVAVAINGVRGGKGGGGSRRAVRWAVENLLPTADRFILVHVMPKITSIPTPMGDLVAVSELDADVVALYVHDVKQKYEQIFVPFKKMCRREKFLLLVETLILEDDNPATALMRYASESGIKHLVLGSCFRTCIARRLKGDSVPSAIMRAASRCFDIYVIYRRRVITRTATTAPSSETDSRQWMLGDTDYYRGSSTVSEKSFGTLSSSSMSNVHRRGDSLEVNSTEQLNSLSTLTEEEDMQAEVESLQLELESTVSLYKQACEELVHAQKKVQSLTSECLEESRKVNAALEREQALRKVAAEEKAKHLEAIKELEEAKDSLAKEAYERQLAELNALKESLEKKKIVDTLLTNDRRYRRYTTAEIEAATNFFDEVNVIGEGGYGKVYVCSLDHTPVAIKVFRHDIFENKDEFLKEVEILSQIRHPHVVLLLGACPERGCLIYEYMENGSLDDHILLRNGKPPLPWSIRLRIVFQVASGLAFLHNSKPEPIIHRDLKPGNILLDRNFVSKISDVGMAKIIGDIVPDNVTEYRNTILAGTLHYMDPEYQRTGTLRPKSDTYALGVTILQLLTGRQPHGLLLAVENSIASGSLADILDKSITDWPLAEAEELAGLALKCLKLRCRDRPDLETEVLPVLKRLVDFADAFRKGAANPPSHYFCPILQEVMEDPYIAADGFTYEYEAIKAWLEKYDVSPVTKLKLQHSMFIPNYTLRSAIQEWRIEFHVLEKFSQLIRDLSNIHTNLPHASIMHS 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10466879 10476671 + CmaCh05G014030.1 Cma05g01403 295521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01403 749 Coils Coil 298 347 - -
Cma05g01403 749 PANTHER OS02G0152300 PROTEIN 2 206 - -
Cma05g01403 749 Pfam Universal stress protein family 19 152 IPR006016 -
Cma05g01403 749 SUPERFAMILY Protein kinase-like (PK-like) 355 628 IPR011009 -
Cma05g01403 749 Gene3D HUPs 3 155 IPR014729 -
Cma05g01403 749 SUPERFAMILY RING/U-box 649 721 - -
Cma05g01403 749 Gene3D Phosphorylase Kinase; domain 1 349 444 - -
Cma05g01403 749 CDD STK_N 3 161 - -
Cma05g01403 749 SMART Ubox_2 655 717 IPR003613 GO:0004842|GO:0016567
Cma05g01403 749 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 213 720 - -
Cma05g01403 749 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 2 206 - -
Cma05g01403 749 Coils Coil 259 279 - -
Cma05g01403 749 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 143 - -
Cma05g01403 749 PANTHER OS02G0152300 PROTEIN 213 720 - -
Cma05g01403 749 Pfam Protein tyrosine and serine/threonine kinase 376 628 IPR001245 GO:0004672|GO:0006468
Cma05g01403 749 Gene3D Transferase(Phosphotransferase) domain 1 445 647 - -
Cma05g01403 749 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672|GO:0006468
Cma05g01403 749 ProSitePatterns Protein kinases ATP-binding region signature. 378 399 IPR017441 GO:0005524
Cma05g01403 749 ProSiteProfiles Protein kinase domain profile. 372 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g01403 749 SMART serkin_6 372 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g01403 749 ProSiteProfiles U-box domain profile. 651 724 IPR003613 GO:0004842|GO:0016567
Cma05g01403 749 CDD RING-Ubox_WDSUB1_like 656 696 - -
Cma05g01403 749 Pfam U-box domain 653 718 IPR003613 GO:0004842|GO:0016567
Cma05g01403 749 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 651 722 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g01403 Cma12g00651 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00976 Cma-Chr2:5829069 Cma05g01403 Cma-Chr5:10466879 2.01E-138 dispersed
Cma05g01403 Cma-Chr5:10466879 Cma08g00785 Cma-Chr8:4725043 2.29E-137 dispersed
Cma18g01253 Cma-Chr18:9779557 Cma05g01403 Cma-Chr5:10466879 8.82E-87 dispersed
Cma05g01403 Cma-Chr5:10466879 Cma17g00710 Cma-Chr17:5869007 1.45E-145 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68606 PF07714 PK_Tyr_Ser-Thr 1.10E-39 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01403 - - cpep:111805862 1353.19