Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01409 ATGCCGGTGCATCTCACGCCGAATGCAATCTCTGCAATTGTCGCTGGTGACGTTAATTCCAAGCCCCTGGTGCAGGTCCTAGATATCAAGCTGATCGGTAATACGCAGGAGAGGTACAGCCTCTTGATCTCCGATGCTGTTTCTACCGAGCAGGCTATGCTCGCAACTCAGCTCAATGATATTATTAAGACTGGACGAGTCAAGAAAGGATCAGTTATCCAGTTGATCGATTATGTTTGCAGTCCCATTAAGAGCCGCAAGGTTATTGTTGTGCTCAGCCTGGAAACTATTATATTGGACAGTGAGATAATTGGGAATCCAAAATCATCTGCCCAATCAGAGAATGTTGCACAAAAGGCAATGCCGTCTGGAAATTTAGAGCAACCTGCCAAGGTTGGTAATCGTCTTGTGAGTGCCAGAAATCCAGTTAATAATGTGCAGAGCTTCCAAGCTACAGTTCAACCTCCGTATCAGCCACCTCCAAATTATAAAAATCATGGTGCAATCATTAAGAATGAGGCACCAGCCCGTGTAATTCCCATAGCTGCATTGAATCCTTATCAGGGACGATGGGCTATAAAGGCAAGAGTTACTGCAAAGGGTGATCTCCGTCGCTATAATAATGCTAAAGGTGATGGAAAAGTTTTCTCTTTTGACCTCCTTGATTCTGATGGAGGAGAGATACGTGTGACCTGCTTCAATGCTGTTGTTGATCGTTTCTACGAGGTCATAGAAGTTGGTAAAGTTTACTTGATTTCTAAAGGTAGCCTAAAACCTGCGCGGAAGGATTTCAATCACCTAAAGAATGAATGGGAGGTTTTCTTGGAGGCATCTTCCACTGTGGAACATTGTCCAGATGAAGATGATACCATACCAAGACAGCAGTTTTCTTTTAGACCTATCAGTGAAATTGAAAATGCTGAAACCAACTCTATTCTGGATGTTATTGGTATTGTAACATCTATCAATCCATCAATTCCTGTTTTGAGGAAAAATGGTATGGAAACTCAAAGAAGGGTTCTGAATTTGAAGGATGCGTCTGGCAGGAGTGTCGAGCTGACACTGTGGGGAGATTTTTGCAACAAAGAAGGTCAAAATCTGCAAGAAATGATCAACTCAGGCCTCTCTCCAGTTTTGGCTGTGAAGTCTGGGAAGGTAAGTGATTTCACTGGGAAATCCATTGGGACAATTTCTTCTACACAGCTTTTCGTAAATCCAGATCTTTCTGAGGCTCTCATCTTGAGAGACTGGTACGATGGTGGAGGGAAGAATACTACTTCTCTGTCTATTTCTAAAGAAATTATGTCAGGATCTGCCAAGAATGAGATTCGAAAGTCTGTATCTCAGATAAAAGATGAAGGACTTGGCAGATCTGATAAGCCAGATTGGATAACCGTGAAAGCAACAATATCGTTTATTAAAACAGATTCCTTCTGCTACACAGCATGTCCATTAATGATTGGAGATCGACAATGCAACAAGAAGGTGACTAGATCAGGAAACTCGAAGTGGCTGTGTGACCGGTGCAATCAAGTATTTGAGGATTGCGATTACAGGTATCTTCTCCAAGCCCAAATCCAAGACCATACTGGATTGACATGGGTGACCGCCTTCCAGGAAACTGGTGAAGAGATTCTGGGTGTCTCAGCCAAGGAGTTGTACATGTTGAAGTATGAACAGCAGGATGATGTCAAGTTTGGTGAAATAATCAGAGGTAAAATTTTCGATCAATTTCTGTTTAGACTCAAAATCAAGGAGGAGATGTACGGGGATGAACAGAGAGTGAAAAATACTGTAGTTAAGGCAGATAAGGAGCCGCATATTACACACAAAACACAGAACCAACCACTACAGACAATGGAACATCATGGGACGACGGCATTATGA 1887 42.5 MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNTQERYSLLISDAVSTEQAMLATQLNDIIKTGRVKKGSVIQLIDYVCSPIKSRKVIVVLSLETIILDSEIIGNPKSSAQSENVAQKAMPSGNLEQPAKVGNRLVSARNPVNNVQSFQATVQPPYQPPPNYKNHGAIIKNEAPARVIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEVIEVGKVYLISKGSLKPARKDFNHLKNEWEVFLEASSTVEHCPDEDDTIPRQQFSFRPISEIENAETNSILDVIGIVTSINPSIPVLRKNGMETQRRVLNLKDASGRSVELTLWGDFCNKEGQNLQEMINSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFVNPDLSEALILRDWYDGGGKNTTSLSISKEIMSGSAKNEIRKSVSQIKDEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDRQCNKKVTRSGNSKWLCDRCNQVFEDCDYRYLLQAQIQDHTGLTWVTAFQETGEEILGVSAKELYMLKYEQQDDVKFGEIIRGKIFDQFLFRLKIKEEMYGDEQRVKNTVVKADKEPHITHKTQNQPLQTMEHHGTTAL 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10498054 10502215 + CmaCh05G014090.1 Cma05g01409 295527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01409 628 MobiDBLite consensus disorder prediction 607 628 - -
Cma05g01409 628 Gene3D - 177 287 IPR012340 -
Cma05g01409 628 CDD RPA1_DBD_A 180 283 - -
Cma05g01409 628 Pfam OB-fold nucleic acid binding domain 192 263 IPR004365 GO:0003676
Cma05g01409 628 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 604 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cma05g01409 628 MobiDBLite consensus disorder prediction 108 122 - -
Cma05g01409 628 Pfam Replication factor-A C terminal domain 463 604 IPR013955 -
Cma05g01409 628 Pfam Replication factor-A protein 1, N-terminal domain 5 97 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cma05g01409 628 CDD RPA1_DBD_C 447 622 IPR013955 -
Cma05g01409 628 Gene3D - 430 621 IPR012340 -
Cma05g01409 628 PANTHER REPLICATION FACTOR A 1, RFA1 2 600 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cma05g01409 628 CDD RPA1_DBD_B 312 419 - -
Cma05g01409 628 SUPERFAMILY Nucleic acid-binding proteins 178 291 IPR012340 -
Cma05g01409 628 SUPERFAMILY Nucleic acid-binding proteins 444 605 IPR012340 -
Cma05g01409 628 Gene3D - 290 429 IPR012340 -
Cma05g01409 628 Pfam Replication protein A OB domain 301 405 IPR031657 -
Cma05g01409 628 MobiDBLite consensus disorder prediction 611 628 - -
Cma05g01409 628 SUPERFAMILY Nucleic acid-binding proteins 295 425 IPR012340 -
Cma05g01409 628 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
Cma05g01409 628 CDD RPA1N 9 98 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cma05g01409 628 Gene3D - 3 111 IPR012340 -
Cma05g01409 628 MobiDBLite consensus disorder prediction 108 128 - -
Cma05g01409 628 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 2 600 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01409 Cma-Chr5:10498054 Cma16g01216 Cma-Chr16:9204013 0 dispersed
Cma05g01409 Cma-Chr5:10498054 Cma06g00602 Cma-Chr6:2913219 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01409 K07466 - csv:101207583 1122.07