Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01413 ATGCCTCTCACGCGGGAGAGGAAGCGTGAGTGCCACGTGCGGAGGTCAGAAAGCAACTTAACGGCGGCTGGAAGAGCGAGAGTGAATAAGGCCAAAGATAGGGTAAGGACGTGTTTGGACGCGAGAGTGGGGCCAACGGAGAAAAAGACGTCAAATTGGAAAAAACCAGAAGGCGGAAGACCGACCGTGTCGCGGTGGGAGCAAATTCCGTCGCTCTCTTCCCCTGTTGCGATTCTCACAGACGAAGGACACAGAAATCTGTACGAGTTGTTGATGAACATGATGGCCATTCCACTCAAAAACTTTTCCCAGAAAAATCTTGATCAGGACTCTGTGCATTCAGTATTTCCATTTTCAGTTGATTGTACGCCGTGGCGGAACTCGAATGAACGGAAGATCCCATTGCCTTTATCTGATAATACAACTCTTAAACTTGAAACACCTCCACAGCATCATCACAAGCATTTGGGCTTTCAGTTACCAGATCAGGAGTCATCTACAGCCCATTCAATTGGTCAATCTCTGCATAAAGTGTGTACTATGGAGGTGCAAAATGCTCAAGAGCAATGCATTTCTTCTGAATCTGGTCAAGAGGAAAATTGTGGCGAGAGTGTGGAGAATCAGATGAAACCAGTTATTTTGTTTAGCAACCCTGAATTTATGTTCAGTACTCCCCAAGTTGATGGCAGCCAGCCAATGACTCGAGTATCATACCCATACATTGATCCTTACTATGGGGGGCTATTGTGCAGTGCCTACACTCAGCAGGCTATTAATAATCAAGCTCAAGTAAATACCAATGTTGTTGGGATGGCACCTGCACGAGTCCCCATTCCGCACGCTCTTGCTGAAGATGGGCCCATCTATGTCAATGCCAAACAATACCATGGAATTCTTAGAAGGAGGCAGTCTCGGGCAAAGCTCGAGTCTCAAAACAGAGTCATAAGAAACCGAAAGCCGTATCTCCACGAGTCTCGACATCTTCATGCGCTGAACAGAGTGAGGGGATCTGGTGGACGCTTTCTCAGCTCAAAAAAGAATCAATCACCTGTTCAATCAACTCCTTCGACCACCTTGAGCCAACAGATGAATACACCAGACTTCAATACATGTAGCTCTGAAACGAGCGACCGTGGCATGAGCTCTGAGATCACGAGTATCTCTAATGGTTCAGTGAGGTTCGGGCGGTCGGACAGTCAGCTCTCCGCTCTCTCTTCCAGGATGGGTGGAAGCATGGAGCAGTATAGCGGAGACTTAATGCGTGTTCGGAATGAGCAGAAACAAACCAACAGTAATCGGACTTGGATTCCAGAAAACATGGATGGGGGAGTAGCTTACAATCCTCGGACTGTGGAAGAGGTCTTCAGGGACTTTAAGGGCCGTCGTGCTGGAATGATTAGAGCTCTCACCACCGATGTCGTGGAATTTTATCAGCTTTGCGACCCTGAGAAGGAAAACCTCTGCCTATATGGACTCCCTAATGAACAGTGGGAAGTTAATTTGCCTGCGGAAGAAGTACCTCCAGAGGTTCCGGAACCAGCATTGGGCATTAACTTTGCTAGAGATGGGATGCAAAAAAAGGATTGGCTATCCCTTGTTGCCGTTCACAGTGACGCATGGCTTCTTGCTGTGGCTTTCTATTTTGGTTCTAGATTTGGCTGTGATAAATCTGACAGGAAACGCCTCTTTACGATGATAAATGATCTGCCCACTATATTTGAGGTTGTGACGGGAAGTGTGAAGAAACAGGGAAAAGACAAGTCATTGGTTTCAAATAACAGCAGCAGCAAATCCAGGACTGGCCCAAAGGGGAGAGACTCTGAATCAAGCAAGTTGTCTAATGGGTTGGCAAAAGATGAAGATGAGGGACTGAATGAGGAAGCTGAGGAGGAGCACGGGGAGACCTTATGTGGGGCATGCGGGGAGAATTATGCATCGGACGAGTTTTGGATATGTTGTGACATATGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCAAGGGCCGAACATATCAAGCAATACAAATGCCCCTCGTGCAGCAATAAGAGGGCACGGCCCTGA 2073 47.52 MPLTRERKRECHVRRSESNLTAAGRARVNKAKDRVRTCLDARVGPTEKKTSNWKKPEGGRPTVSRWEQIPSLSSPVAILTDEGHRNLYELLMNMMAIPLKNFSQKNLDQDSVHSVFPFSVDCTPWRNSNERKIPLPLSDNTTLKLETPPQHHHKHLGFQLPDQESSTAHSIGQSLHKVCTMEVQNAQEQCISSESGQEENCGESVENQMKPVILFSNPEFMFSTPQVDGSQPMTRVSYPYIDPYYGGLLCSAYTQQAINNQAQVNTNVVGMAPARVPIPHALAEDGPIYVNAKQYHGILRRRQSRAKLESQNRVIRNRKPYLHESRHLHALNRVRGSGGRFLSSKKNQSPVQSTPSTTLSQQMNTPDFNTCSSETSDRGMSSEITSISNGSVRFGRSDSQLSALSSRMGGSMEQYSGDLMRVRNEQKQTNSNRTWIPENMDGGVAYNPRTVEEVFRDFKGRRAGMIRALTTDVVEFYQLCDPEKENLCLYGLPNEQWEVNLPAEEVPPEVPEPALGINFARDGMQKKDWLSLVAVHSDAWLLAVAFYFGSRFGCDKSDRKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSSKSRTGPKGRDSESSKLSNGLAKDEDEGLNEEAEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10511813 10519700 + CmaCh05G014130.1 Cma05g01413 295531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01413 690 ProSitePatterns NF-YA/HAP2 subunit signature. 289 309 IPR018362 GO:0003677|GO:0016602
Cma05g01413 690 PRINTS CCAAT-binding transcription factor subunit B signature 318 341 IPR001289 GO:0003700|GO:0006355
Cma05g01413 690 PRINTS CCAAT-binding transcription factor subunit B signature 287 309 IPR001289 GO:0003700|GO:0006355
Cma05g01413 690 ProSiteProfiles Zinc finger PHD-type profile. 634 686 IPR019787 -
Cma05g01413 690 MobiDBLite consensus disorder prediction 1 25 - -
Cma05g01413 690 ProSiteProfiles NF-YA/HAP2 family profile. 284 344 IPR001289 GO:0003700|GO:0006355
Cma05g01413 690 PANTHER CPG BINDING PROTEIN 442 690 IPR045104 GO:0006355|GO:0042393
Cma05g01413 690 ProSitePatterns Zinc finger PHD-type signature. 637 683 IPR019786 -
Cma05g01413 690 MobiDBLite consensus disorder prediction 337 395 - -
Cma05g01413 690 MobiDBLite consensus disorder prediction 1 16 - -
Cma05g01413 690 SUPERFAMILY FYVE/PHD zinc finger 627 687 IPR011011 -
Cma05g01413 690 MobiDBLite consensus disorder prediction 584 600 - -
Cma05g01413 690 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 287 341 IPR001289 GO:0003700|GO:0006355
Cma05g01413 690 SMART PHD_3 636 684 IPR001965 -
Cma05g01413 690 CDD PHD_AL_plant 636 686 IPR044104 -
Cma05g01413 690 Gene3D - 284 346 - -
Cma05g01413 690 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 442 690 - -
Cma05g01413 690 Pfam Alfin 450 578 IPR021998 GO:0006355|GO:0042393
Cma05g01413 690 SMART cbf3 283 344 IPR001289 GO:0003700|GO:0006355
Cma05g01413 690 MobiDBLite consensus disorder prediction 341 395 - -
Cma05g01413 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 627 685 IPR013083 -
Cma05g01413 690 Pfam PHD-finger 637 686 IPR019787 -
Cma05g01413 690 MobiDBLite consensus disorder prediction 601 621 - -
Cma05g01413 690 MobiDBLite consensus disorder prediction 584 628 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01447 Cma-Chr3:9056189 Cma05g01413 Cma-Chr5:10511813 5.13E-34 dispersed
Cma05g00416 Cma-Chr5:1869933 Cma05g01413 Cma-Chr5:10511813 2.85E-135 dispersed
Cma05g01413 Cma-Chr5:10511813 Cma17g00700 Cma-Chr17:5789057 1.10E-113 dispersed
Cma07g00062 Cma-Chr7:335438 Cma05g01413 Cma-Chr5:10511813 1.28E-36 dispersed
Cma12g00657 Cma-Chr12:3506288 Cma05g01413 Cma-Chr5:10511813 2.44E-107 dispersed
Cma14g00367 Cma-Chr14:1664855 Cma05g01413 Cma-Chr5:10511813 9.02E-31 dispersed
Cma12g01318 Cma-Chr12:10095380 Cma05g01413 Cma-Chr5:10511813 7.69E-151 transposed
Cma12g01317 Cma-Chr12:10090307 Cma05g01413 Cma-Chr5:10511813 6.69E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35119 PF12165 Alfin 1.60E-66 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01413 - - rcu:8272513 433.721