Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01420 ATGAGCGCACGAAACAGGCTCCCATTCACTGCAGCTCAATGGCAAGAGCTAGAACACCAAGCCCTCATCTTCAAGTACATGGTCTCCGGCATCCCTGTCCCTCCTGATCTGCTCTACACCATGAAGAGATCCTCTTTGGACACTCCTTTCATTTCCAGGCTCTTTCCCCACCAATATCCAGACGTTGGATGGAACTTCGTGCAGATGGGTTCGGGGAGGAAAATCGACCCAGAGCCTGGAAGGTGCAGAAGAACAGACGGCAAAAAATGGAGATGCTCCAAAGAGGCATATCCAGATTCTAAATACTGTGAGAGACATATGCACAGAGGCAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAACCAACAACAACAATAACTGCTCTAACCTCTAATCCATCTACCCCACCCATCTCCTCCATCACCCACAACTCCACCGCTTCACTCAGCACCAACTCATTTCCCTCTGAAATCCATACCCATTCTTGTTTCAATACTCCTTCTCCTCACCCTTTTCTCTATCAACATGGCTCCTTTTCTAGGCCCCCTGGTTCTGCCCATTTGCAGCACAGCTCCAACCCATCCTTACTTCTGGACCCTCCTGCAGATTACAGAAGAAATAGGTATGTTTATGGGGGGAAGGAAGATGTTGATAAGCATCCATTTCTATCGGAAGAACATTCTGGGAACATGAGAGGCTTCTCCGCTTCGTCTATGGAAGATCCCTGGCAGCTAACTCCTCTGACAATGAGTTGTTCTTCCTCATCCCCCAGACACAAGAACTGCTCAGCTTTACAAGGTGACTACTCTTCTTACTTGCAGCTGCAGAGCTTTGGCGGTTCCCCTAAGCAAGTGAAGCAAGACGAGCATTACTACGCGGTGGGAAAATATAATGAGATGCAGAGTAAGATGGAACGAGAGAAACCGGAGAAGACTATGCATCACTTCTTTGGTGAATGGTCTCCTAAAGACAGGGAGTCGTGGGTTGATTTGGATGATAAGTCATCCAATACTGGCTCAGTTTCTGAAACTCGGCTTTCAATGTCTATTCTTAACTCGTCGCAGCATGACTTCTCCTCCATTTTCAGTTCCAATAAGCATAATGAAAACTGA 1116 46.95 MSARNRLPFTAAQWQELEHQALIFKYMVSGIPVPPDLLYTMKRSSLDTPFISRLFPHQYPDVGWNFVQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKPTTTITALTSNPSTPPISSITHNSTASLSTNSFPSEIHTHSCFNTPSPHPFLYQHGSFSRPPGSAHLQHSSNPSLLLDPPADYRRNRYVYGGKEDVDKHPFLSEEHSGNMRGFSASSMEDPWQLTPLTMSCSSSSPRHKNCSALQGDYSSYLQLQSFGGSPKQVKQDEHYYAVGKYNEMQSKMEREKPEKTMHHFFGEWSPKDRESWVDLDDKSSNTGSVSETRLSMSILNSSQHDFSSIFSSNKHNEN 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10540072 10541351 - CmaCh05G014200.1 Cma05g01420 295538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01420 371 MobiDBLite consensus disorder prediction 178 200 - -
Cma05g01420 371 Pfam WRC 77 119 IPR014977 -
Cma05g01420 371 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cma05g01420 371 PANTHER - 2 338 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cma05g01420 371 Pfam QLQ 8 38 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cma05g01420 371 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cma05g01420 371 MobiDBLite consensus disorder prediction 183 197 - -
Cma05g01420 371 PANTHER GROWTH-REGULATING FACTOR 5 2 338 - -
Cma05g01420 371 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g01420 Cma11g00725 CCT
Cma05g01420 Cma10g00759 CCT
Cma05g01420 Cma10g00759 ECH
Cma05g01420 Cma11g00725 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01420 Cma-Chr5:10540072 Cma20g00944 Cma-Chr20:4758947 1.49E-57 dispersed
Cma07g00633 Cma-Chr7:2751972 Cma05g01420 Cma-Chr5:10540072 3.11E-37 dispersed
Cma12g01312 Cma-Chr12:10074353 Cma05g01420 Cma-Chr5:10540072 2.80E-42 transposed
Cma01g00034 Cma-Chr1:133440 Cma05g01420 Cma-Chr5:10540072 6.63E-73 wgd
Cma10g00759 Cma-Chr10:3480515 Cma05g01420 Cma-Chr5:10540072 1.06E-110 wgd
Cma11g00725 Cma-Chr11:3543552 Cma05g01420 Cma-Chr5:10540072 1.89E-99 wgd
Cma14g01236 Cma-Chr14:9788235 Cma05g01420 Cma-Chr5:10540072 5.64E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35120 PF08879 WRC 7.80E-21 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01420 - - cmos:111450713 733.791