Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01434 ATGGGTGGTTTGAAAGCAGAAGGGGTCCAACAAGATATTGGGAGCCACCCGTACCATATGCGTTCAGGACCAGCGCTGCCGAACGGAAACAGTTATATGGGATTCTCTACACTCCCACGTCAAGGTGTATTTCCCTTTCTCTTGTACCCACCACTTGGAAGGCATAAAAAGGTCGATGTTAAGGCCCAATTTCGGTTACTTGGTGCATTTGCTGTCGGACACCTGGAATTGGTGCCCCCAGGGTACGATTTCATCTCTCTATTCCTCTTAACCTTCTTTAATTACATCCTCCCTCCTCCTCCTCCTGTGTCCCCTGCAAAAACTTCGTCTCTTGCGGATATATATCCTAATTTTTTAACGTATTCTTCCAGTGATCCAGTCTCTTTTTATTTCCTGATGAAAGCTCCCCCAAATGGGTTTCTGCCCAATTCTGGAGAAGGTGAAAGGAAGAACATCAATTCTGAGCTATGGCATGCTTGTGCTGGGCCTCTTGTTTCGTTACCTCCAGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGCCACAGTGAACAAGTTGCAGCTTCGATGAATAAGGAGACTGATTTCATTCCAAGCTACCCTAACCTTCCTTCTAAGTTGATCTGCATGCTCCATAACGTCACGTTACATGCTGATCTTGAAACGGATGAAGTGTATGCACAAATGACCCTTCAACCAGTGAATAAATATGAAAAAGAAGCTTTATTGGCATCTGATATTGGCCTCAAGCAAAACAGGCAGCCTGCTGAATTCTTCTGTAAAACTCTAACAGCTAGCGACACCAGCACTCACGGTGGATTTTCTGTGCCTCGTCGTGCAGCTGAGAAGATTTTTCCCCCATTAGACTACTCGATGCAACCCCCTGCTCAGGAACTAGTGGCTAGAGATTTGCATGATAATTCGTGGACATTCAGACATATTTACCGTGGCCAACCAAAAAGACACCTTCTGACCACTGGTTGGAGTGTTTTTGTCAGCACAAAACGACTCTTTGCTGGAGATTCGGTGCTCTTTATAAGAGATGAAAAGTCACAGCTTCTCTTAGGCATAAGGCGTGCTAACAGGCAGCAGCCAGCTCTGTCTTCATCAGTCATATCAAGTGATAGCATGCACATAGGAATTCTTGCTTCTGCTGCTCACGCAGCTGCAAATAACAGTCCTTTTACCATATTTTACAACCCTAGGGCCAGTCCTTCTGAATTTGTGATTCCTTTGGCCAAGTATAATAAGGCAATGTATGCACAAGTTTCCCTTGGCATGCGATTTAGGATGATGTTTGAAACCGAGGAGTCGGGAGTACGTAGATATATGGGTACAATTACTGGTATCAGTGACATGGATTCCGTACGATGGAAAAATTCACAATGGCGCAATCTTCAGGTCGGATGGGATGAATCGGCAGCTGGTGAACGACCAAACAGAGTTTCAATATGGGAGGTTGAGCCTGTTGTGACTCCTTTTTACATATGTCCACCTCCATTCTTCAGGCCCAAATTCCTTAAACAACCAGGGATGCCAGTGACCTTGAGGATCGATTTTGCAGACGATGAATCTGAGATTGAAAATGCTTTTAAGAGAGCGATGCCATGGTTTGGTGATGAGTTCGGCATGAAAGATGCGTCAAGCTCAATCTTTCCTGGTTTAAGTTTAGTGCAGTGGATGAGCATGCAACATAATAATCAGTTCCCAGCAGCTCAATCTGGAATTTTGCCGTCCATGGTTGCTCCTAGTGCTCTGCATGGAACTTTTACTAATGATGAGTCATCCAAATTATTGAGTTTTCAAGCACCAGTAATGTCTTCACCAAATCTCCAATTCAGCAAAGCAAATCAACAGAACCAAGTTGCCCAGTTGCCACCAACTACGTGGTCTCAACAGCAGCAGGTGCAGCAGTTGTTACAAGTTCCTGCTAGCCAACAGCAGCAGCAGCAGTTGCCACTCCAGCAGGAGCTACAGCAGCAGGTGCCCCAGCAACAGCAACTCCAGATGCAACAGCCACAACGACATCAGCAGACCTCCCAATCTGCTCTTCTGAACAACAGTGTTACTGCTCCGAACCATTTGCCAAATCAGACTTTGCAACAACCGCTTGTATACTCTCAGCTACAACAACAGAAATTGCTTGCAGGCAATATACAATCACATCAAACTAGCCAACCATCCAATAAAAACTTATTTCAGACTACATCTTTATCACAAGAAGTACAGTTTCAGCCACAAATAGAGCAGCAACCTAGTCTTCTTCCGAAACACCAGCAGCCAACACAAGTTCAACAGGCCCCACTACAGTTAATGCAACAAAGTCTGTCTCAGAGAGCACAACAACAGCCACAAGTTCAGCAATTTTCACAGCCAGTCCCAACAGAGCAACAACTTCAATTACAGCTGCTACAGAAGCTGCAGCAGCAGCAGCAGCAGCAGCAGCATCCGTTGCTCTCCCCAGCTAGCCCACTGTTACCACCTCAGCTGCTACAGCAGCAGAATGTTCATCAGGAAAACCAGCAGTTACCACCATTGCCTTTATCCAATCAGCAGCAGTTCAATACTAGTGGAGGCAGCTTACAAACAGAAAAACATAACAGCAATGGCTTTTCAAGTTTAGGCCTCATGCAGTCCCAGCAGGCTCCTATAACCCATTCCCATAACCAATTCAAACCAACCATGGCAATTAGAGCATACTCTGGACTGACTGATGGAGATGCTCCGTCTTGTTCAACCTCGCCTTCCACTAATAATTGCCAAGTTTCAGCATCAAACATGCTCAATAAGAACCAACAAGGAGCAGCCACACTGGGGGGAGACCCAGTAGCTGAGCCTGTAACTAACCTGGCTCAGGACCTACAAAGCAAACCTGATTTGAGAATCAAACATGAGTTTCCTAGCTCAAAAGGATTGGACCAACTAAAGTATAAAGGCACTGTTCCTGATCAGTTAGAAGCGTGTTCTTCTGGGACATCATATTGTTTGGATGCTGGCACCATTCAGCAGACTTTCCCACTCCCTACATGTTTGGATAATGATGTACAATCACATACACGAAACAATATCCCTTTCAGTAATAGCATGGATGGATTGGCACCAGATACCTTATTATCGAGGGGATACGACTCGCAAAAAGATCTTCAGAACTTACTTTCTAACTATGGTGGAGGTGTGCCTAGAGATATTGAAACAGAGTTGTCCACTGCTGCAATCAGCTCTCAGTCATTTGGGGTCCCAAACTTGCCTTTTAAGTCTGACTGCTCAAATGATGTCAACGTAAATGAAGCTGGAGCTTTGAGTAGTGGACTGTGGGCAAACCACAGTCAACGTATGCGTACATACACAAAGGTTCAAAAACGGGGATCAGTGGGTAGGTGCATCGATGTCACTCGTTACAAAGGATATGATGAGCTTAGACATGATCTTGCCCGCATGTTTGGCATTGAAGGACAGTTAGAAGATCCTCAACGAACTGATTGGAAACTTGTTTATGTGGATCACGAAACCGATATACTTCTAGTTGGTGATGATCCTTGGGAAGAGTTCGTAAGCTGTGTTCAGAGCATAAAGATCCTGTCATCCGCTGAAGTACAGCAGATGAGTTTGGATGGAAATTTGGGTCACATTCAGGCTCCCAATCAAGCTTGCAGTGGAACGGATAGTGGAAATGCTTGGAGAGGGCAGTATGATGATAACTCGGCTGCATCATTCAACCGATAA 3720 45.16 MGGLKAEGVQQDIGSHPYHMRSGPALPNGNSYMGFSTLPRQGVFPFLLYPPLGRHKKVDVKAQFRLLGAFAVGHLELVPPGYDFISLFLLTFFNYILPPPPPVSPAKTSSLADIYPNFLTYSSSDPVSFYFLMKAPPNGFLPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPSYPNLPSKLICMLHNVTLHADLETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILASAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYAQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQVGWDESAAGERPNRVSIWEVEPVVTPFYICPPPFFRPKFLKQPGMPVTLRIDFADDESEIENAFKRAMPWFGDEFGMKDASSSIFPGLSLVQWMSMQHNNQFPAAQSGILPSMVAPSALHGTFTNDESSKLLSFQAPVMSSPNLQFSKANQQNQVAQLPPTTWSQQQQVQQLLQVPASQQQQQQLPLQQELQQQVPQQQQLQMQQPQRHQQTSQSALLNNSVTAPNHLPNQTLQQPLVYSQLQQQKLLAGNIQSHQTSQPSNKNLFQTTSLSQEVQFQPQIEQQPSLLPKHQQPTQVQQAPLQLMQQSLSQRAQQQPQVQQFSQPVPTEQQLQLQLLQKLQQQQQQQQHPLLSPASPLLPPQLLQQQNVHQENQQLPPLPLSNQQQFNTSGGSLQTEKHNSNGFSSLGLMQSQQAPITHSHNQFKPTMAIRAYSGLTDGDAPSCSTSPSTNNCQVSASNMLNKNQQGAATLGGDPVAEPVTNLAQDLQSKPDLRIKHEFPSSKGLDQLKYKGTVPDQLEACSSGTSYCLDAGTIQQTFPLPTCLDNDVQSHTRNNIPFSNSMDGLAPDTLLSRGYDSQKDLQNLLSNYGGGVPRDIETELSTAAISSQSFGVPNLPFKSDCSNDVNVNEAGALSSGLWANHSQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDHETDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGNLGHIQAPNQACSGTDSGNAWRGQYDDNSAASFNR 1239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10586898 10596500 + CmaCh05G014340.1 Cma05g01434 295552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01434 1239 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 133 1227 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma05g01434 1239 ProSiteProfiles B3 DNA-binding domain profile. 258 360 IPR003340 GO:0003677
Cma05g01434 1239 CDD B3_DNA 257 358 IPR003340 GO:0003677
Cma05g01434 1239 Gene3D - 1107 1201 - -
Cma05g01434 1239 Gene3D - 256 359 IPR015300 -
Cma05g01434 1239 Pfam AUX/IAA family 1109 1198 IPR033389 -
Cma05g01434 1239 Gene3D - 421 492 - -
Cma05g01434 1239 SUPERFAMILY CAD & PB1 domains 1125 1190 - -
Cma05g01434 1239 Pfam B3 DNA binding domain 258 359 IPR003340 GO:0003677
Cma05g01434 1239 Pfam Auxin response factor 384 466 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma05g01434 1239 SUPERFAMILY DNA-binding pseudobarrel domain 248 387 IPR015300 -
Cma05g01434 1239 MobiDBLite consensus disorder prediction 1220 1239 - -
Cma05g01434 1239 SMART B3_2 258 360 IPR003340 GO:0003677
Cma05g01434 1239 MobiDBLite consensus disorder prediction 834 873 - -
Cma05g01434 1239 ProSiteProfiles PB1 domain profile. 1112 1205 IPR000270 GO:0005515
Cma05g01434 1239 PANTHER AUXIN RESPONSE FACTOR 19 133 1227 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g01434 Cma10g00807 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01434 Cma-Chr5:10586898 Cma12g01336 Cma-Chr12:10158039 0 dispersed
Cma05g01434 Cma-Chr5:10586898 Cma05g00728 Cma-Chr5:4096173 3.95E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35121 PF02309 AUX_IAA 2.00E-09 CL0072 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01434 K14486 - csv:101210917 1722.21