Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g01436 ATGGCCGCTGTTCGAATCGTGTTCCTGTTCCTCCTCCTGGGTGGTCTCCCCCTGTCGTGTCCCCTGTCCGAGAAGGAGGCCCTCCTCAAGCTGAAGCAATCCTTCACCCATTCCGGATCCCTCAACTCATGGAACCCGGACTCAGTCCCCTGCTCGGCTCGATGGACTGGCATCATCTGCAACAAGGGCGTCATCACCGGCCTACATCTCTCCGGCCTCCAACTCTCCGGCACCATTGACGTGGAAGCTCTCATCCAGCTTCCCAGCCTGAGAACCATCAGCTTAATCGACAACAAATTCACCGGCCCCATTCCGGAGTTCAACAAAATCGGGGTACTCAAGGCGCTCCTCCTCACCCGGAACCAATTCTTCGGGGATATCCCCGACGATTTCTTTTCAACCCTCACCTCCCTCAAGAAGGTATATCTCTCCTCCAACAACTTCTCCGGGAACATTCCAAATTCTCTGGCCCAACTCTCCCATCTCCTCGAACTCCACCTCGACAGAAACCAATTCTCCGGCCCTGTCCCCCACCTCAAATACGCCTCCATTATAACCTCCCTCGATTTCTCCAACAACAACCTCCAGGGCCAAATACCCGACAGCCTCTCCAAATTCGACGCAAAGGCATTCGCCGGAAATGAAGGCCTCTGCGGGAACCCACTCCCCAAATCCTGCGAAGACAATGCTTCTCCTCCTGGGGAGTCCCAAGCCAACATCTCCAAGTTGGTAGTGGCTTCATTGATTGCCGTGGTTGTGTTTCTGATGGTGTTTATATTTCTGAGCGCGTCGAAGCGCAGAGAGGACGAGTTCAGCATGCTGGGGAGGGATCGGGAGGAGGTGGTGGAGGTGCACGTTCCTGGTTCAGCCCAGGATAGGCAGTCGATTAGGAGAGGAGGTGGGGACTCCAGGAGAGGCTCCAAACAGGGGAAGGCAGGGATGAGCGATCTTGTGGTGATCAACGACGAGAAGGGTACGTTTGGGTTGGCGGATTTGATGAAGGCGGCAGCGGAGGTGCTGGGGAATGGCGGGTTGGGGTCGGCGTACAAGGCGGTCATGGCGAACGGGCTGTCAGTGGTGGTGAAGAGAATGAGAGAAATGAACAAAATAGGGAAGGATGGGTTCGATGCGGAGATGAGGCGGCTGGGAAGACTGCGCCATCAGAACATACTAACGCCTTTGGCGTATCATTATAGGAGAGAGGAGAAGCTGGTGGTGTCAGAGTACGTTCCAAAGGGCAGCCTGTTGTACGTGTTGCACGGTGACCGTGGAGCCTGCCATGCTGACCTTGACTGGGAGACCCGGCTAATAATTGTGAAGGGGATTGCAAGTGGTCTGGGGTTCCTCCATTCGGAATTCGCGACCTACGATCTGCCGCATGGGAATCTGAAATCCAGCAACGTTCTTCTATGCGACGACTACGAGCCACTTCTGAGCGACTACGCGTTTCATCCGCTCATCAATCCCAGCAATGCGAGCCAGGCAATGTTCGCCTACAAAGCCCCCGAGTACGCCCAGAACCAGGAAGTTTCTCCCAAGTCTGATGTTTATTGCCTTGGAATTATCATTCTGGAAATAATGACCAGCAAGTTTCCTTCTCAATATCTAACCAATGGCAAGGGTGGCACCGATGTGGTGCAGTGGGTCTCCTCCGCAGTAGCCGAGAAGAGGGAGGCGGAACTCATCGACCCTGAGATTGCAAACGACGCCGCTGACGAACTGGATCGAATGGTCCAGCTACTCACAATCGGCGCGGATTGCACTCACGCCAGTCCTCAGCAACGGCCGGATATGAAGGAAGCCATTAGGAGAATAGAAGAGATTTGA 1827 54.68 MAAVRIVFLFLLLGGLPLSCPLSEKEALLKLKQSFTHSGSLNSWNPDSVPCSARWTGIICNKGVITGLHLSGLQLSGTIDVEALIQLPSLRTISLIDNKFTGPIPEFNKIGVLKALLLTRNQFFGDIPDDFFSTLTSLKKVYLSSNNFSGNIPNSLAQLSHLLELHLDRNQFSGPVPHLKYASIITSLDFSNNNLQGQIPDSLSKFDAKAFAGNEGLCGNPLPKSCEDNASPPGESQANISKLVVASLIAVVVFLMVFIFLSASKRREDEFSMLGRDREEVVEVHVPGSAQDRQSIRRGGGDSRRGSKQGKAGMSDLVVINDEKGTFGLADLMKAAAEVLGNGGLGSAYKAVMANGLSVVVKRMREMNKIGKDGFDAEMRRLGRLRHQNILTPLAYHYRREEKLVVSEYVPKGSLLYVLHGDRGACHADLDWETRLIIVKGIASGLGFLHSEFATYDLPHGNLKSSNVLLCDDYEPLLSDYAFHPLINPSNASQAMFAYKAPEYAQNQEVSPKSDVYCLGIIILEIMTSKFPSQYLTNGKGGTDVVQWVSSAVAEKREAELIDPEIANDAADELDRMVQLLTIGADCTHASPQQRPDMKEAIRRIEEI 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10603396 10605579 + CmaCh05G014360.1 Cma05g01436 295554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g01436 608 PANTHER LRR RECEPTOR-LIKE KINASE 4 608 - -
Cma05g01436 608 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 4 608 - -
Cma05g01436 608 Gene3D Ribonuclease Inhibitor 22 181 IPR032675 -
Cma05g01436 608 ProSiteProfiles Protein kinase domain profile. 334 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g01436 608 Pfam Leucine rich repeat N-terminal domain 23 61 IPR013210 -
Cma05g01436 608 MobiDBLite consensus disorder prediction 286 312 - -
Cma05g01436 608 CDD STKc_IRAK 340 608 - -
Cma05g01436 608 Pfam Leucine rich repeat 113 172 IPR001611 GO:0005515
Cma05g01436 608 Gene3D Phosphorylase Kinase; domain 1 302 409 - -
Cma05g01436 608 Gene3D Ribonuclease Inhibitor 182 229 IPR032675 -
Cma05g01436 608 Pfam Protein kinase domain 338 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g01436 608 Gene3D Transferase(Phosphotransferase) domain 1 410 608 - -
Cma05g01436 608 SUPERFAMILY Protein kinase-like (PK-like) 338 604 IPR011009 -
Cma05g01436 608 SUPERFAMILY L domain-like 19 206 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01436 Cma-Chr5:10603396 Cma14g01180 Cma-Chr14:9442176 2.82E-142 dispersed
Cma12g01333 Cma-Chr12:10144846 Cma05g01436 Cma-Chr5:10603396 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68608 PF00069 Pkinase 6.70E-26 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g01436 - - cmo:103498999 1017.68