Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00003 ATGTCTTTTTCAGCTGTCTCAAGTCTTCCCTCAGGAGGACCCACTTCAGGGCCCTCTTCAGATGCATTGTATAGGGAATTATGGCATGCCTGTGCTGGACCGCTTGTCACCCTTCCTCGCCAAGATGAACGAGTATACTACTTTCCACAGGGTCACATGGAACAGCTGGAAGCATCAATGCATCAAGGATTAGAGCAACAAATGCCTTCGTTCAACCTACCATCAAAAATACTTTGTAAAGTTGTCAATGTTGTTCTTCGGGCGGAACCTGACACAGATGAAGTGTATGCTCAGATAACTCTGTTACCGGAAAGCAATCAAAGTGAAGTAACAAGCCCAGATCCTGCCCTTCCTGAGCCTACAAGATGTAATGTCCACTCATTTTGCAAGACGCTCACTGCTTCTGACACTAGCACTCATGGTGGCTTCTCTGTTCTTAGGAGGCATGCGGATGACTGCCTGCCACCTCTGGATATGTCTCAGCAGCCACCGTGGCAAGAATTGGTTGCGAGTGACTTACATGGGAATCAATGGCATTTTCGGCACATTTTCAGAGGTCAACCAAGGCGTCATTTACTAACAACTGGGTGGAGTGTCTTCGTTAGTTCCAAAAAACTAGTAGCTGGAGATGCTTTTATCTTTTTAAGAGGTGAAAATGGAGAGCTTCGTGTTGGGGTGAGAAGACTCATGAGACAGCTAAATAATATGCCATCTTCTGTTATATCTAGTCACAGCATGCATCTCGGAGTTCTAGCTACTGCTTCTCATGCTGTTTCAACTGGAACACTCTTTTCTGTTTTTTACAAGCCACGAACAAGCAGGTCTACATTTCTTGTGAGTCTAAACAAGTACCTTGAAGCTCAAAACCATAAACTCTCTGTTGGGATGAGGTTCAAGATGAGGTTTGAAGGCGAGGAGGTTCCTGAAAGAAGTTTTAGTGGAACAATTGTTGGTCTTGGAGATAATGCATCGCCTGGATGGGCTAATTCTGACTGGCGATCTCTAAAGGTGCAATGGGATGAGCCTTCATCTATTCTGCGTCCAGATAGGGTGTCTGCCTGGGAATTGGAGCCACTTGTTGCATCTAGCCCTCTAAGCTCTCTGCCTGCACAGAGGAACAAGCGTCCACGACCAGCTGTTTTGCCTTCCCCTTCCGCAGATGCAGCTGTACTCGGTGGGTGGAAACCTACGGTTGAATCTTCTGCTTTTTCATATACCGAGCCGCAGCGGGGAAGGGACCTATATTCTTCACCAAAGTTCAGTACTGCTGCTTCAAATTCACTTGGTTTTAATGGGAATAGTTCTTTTGGCGCTGTGTCCAGCAACGCCTACTGGTCTAATACCAGTATGGTGGAAAATGTTATGGACACTTCATCTCATGGAGCAAAAAGAGAACCCGTTGAAAAGAAACAGAACACTAGGAACGGATGCAGGCTTTTTGGGTTCCAGCTTCTTGGAAACTCCAATGTAGAGGAAGCTTCTCCAGTTTCAACACCAAAAATGGTGGGCGAGGATAGGCCAGTTCCACCTATAGATACAGCATTTGACCAGCATTTTGACCAGCATTTTGACCCATCGAACATTCACCGATCAGATATGCCTTCAGTAAGCTGTGATGCTGATAAATCATGCCTGATTTCCCCTCTAGAGTCTCAAAGCAGACAAATCCGCAGCTGCACAAAGGTTCAAATGCAAGGAATTGCTGTTGGGAGGGCCGTAGATTTAACACGGTTCAATCAATATGATGATCTACTTAGGAAACTGGAGGAGATGTTTGACATAGAGGGTGAGCTTTGTGGCTTGGTAAAGAAATGGAAGGTTGTTTACACCGATGATGAAGATGATATGATGATGGTTGGAGATGATCCTTGGAACATGGTAAGGAAGATATTCATCTACACGACAGAAGAAGTGAAGAGACTGTCGCCCAAGATAAAACTCCCACTCAGTGGAGAGATGAAGTTCAGCAAGCCAGATTCTGATATGGTTGCCAACCATACGGAGGATCAATCGTCCATCAGCGGATCAGATTGCTGA 2037 45.61 MSFSAVSSLPSGGPTSGPSSDALYRELWHACAGPLVTLPRQDERVYYFPQGHMEQLEASMHQGLEQQMPSFNLPSKILCKVVNVVLRAEPDTDEVYAQITLLPESNQSEVTSPDPALPEPTRCNVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVASDLHGNQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASHAVSTGTLFSVFYKPRTSRSTFLVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWANSDWRSLKVQWDEPSSILRPDRVSAWELEPLVASSPLSSLPAQRNKRPRPAVLPSPSADAAVLGGWKPTVESSAFSYTEPQRGRDLYSSPKFSTAASNSLGFNGNSSFGAVSSNAYWSNTSMVENVMDTSSHGAKREPVEKKQNTRNGCRLFGFQLLGNSNVEEASPVSTPKMVGEDRPVPPIDTAFDQHFDQHFDPSNIHRSDMPSVSCDADKSCLISPLESQSRQIRSCTKVQMQGIAVGRAVDLTRFNQYDDLLRKLEEMFDIEGELCGLVKKWKVVYTDDEDDMMMVGDDPWNMVRKIFIYTTEEVKRLSPKIKLPLSGEMKFSKPDSDMVANHTEDQSSISGSDC 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6741 13836 - CmaCh06G000030.1 Cma06g00003 295557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00003 678 PANTHER AUXIN RESPONSE FACTOR 9 9 654 - -
Cma06g00003 678 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 654 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma06g00003 678 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Cma06g00003 678 Gene3D - 125 230 IPR015300 -
Cma06g00003 678 ProSiteProfiles PB1 domain profile. 557 637 IPR000270 GO:0005515
Cma06g00003 678 SUPERFAMILY CAD & PB1 domains 559 629 - -
Cma06g00003 678 SMART B3_2 128 230 IPR003340 GO:0003677
Cma06g00003 678 Gene3D - 291 364 - -
Cma06g00003 678 CDD B3_DNA 126 228 IPR003340 GO:0003677
Cma06g00003 678 SUPERFAMILY DNA-binding pseudobarrel domain 117 257 IPR015300 -
Cma06g00003 678 Pfam Auxin response factor 254 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma06g00003 678 MobiDBLite consensus disorder prediction 656 678 - -
Cma06g00003 678 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677
Cma06g00003 678 MobiDBLite consensus disorder prediction 365 387 - -
Cma06g00003 678 Gene3D - 552 642 - -
Cma06g00003 678 Pfam AUX/IAA family 555 627 IPR033389 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01901 Cma-Chr4:9974922 Cma06g00003 Cma-Chr6:6741 0 dispersed
Cma06g00003 Cma-Chr6:6741 Cma08g00114 Cma-Chr8:601684 0 dispersed
Cma06g00003 Cma-Chr6:6741 Cma04g00675 Cma-Chr4:3436434 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35122 PF02309 AUX_IAA 7.70E-08 CL0072 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00003 K14486 - csv:101204612 1229.54