Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma06g00005 | ATGGATGAAAACGGTGGGATCAAGTTGACTGGAATCCGCCAGATTGTGAGGCTGAAAGAGACTCTCCAACACTGGCAAGGCGTCGCAATTAACCCGATATCCAAAGCAGCAGCCCATGAAAATCCAAGCCAAAATATAAATCAAAATAATGGGATCCTTTCACCAGCAATCAACAAAAGGCTGACGAATGTTTTGTGTTGTGATTCGGATGAGGAGAGCTGCCAGAGCCCTGAGCATCCACCCGACGTACCAAAAGGGTACTTGGCTGTTTATGTTGGGCCGGAGCTTCGGAGGTTCATCATTCCCACTAGCTATCTTAGCCATTCGGTGTTCAAGGTGTTGCTGGAAAAGGCAGAGGAGGAGTTTGGATTTGATCATAGCGGCGGCCTCACATTCCCATGCGAGATCGAGACCTTCAAATACCTTCTCAAGTGCATGGAAAGCCAGCACAAGGATCATCCTGATGACCACACCCCAGCTGGGAGTTCCTTAACCATGGAAGGATAA | 507 | 48.52 | MDENGGIKLTGIRQIVRLKETLQHWQGVAINPISKAAAHENPSQNINQNNGILSPAINKRLTNVLCCDSDEESCQSPEHPPDVPKGYLAVYVGPELRRFIIPTSYLSHSVFKVLLEKAEEEFGFDHSGGLTFPCEIETFKYLLKCMESQHKDHPDDHTPAGSSLTMEG | 168 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 17377 | 18008 | - | CmaCh06G000050.1 | Cma06g00005 | 295559 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma06g00005 | 168 | Pfam | Auxin responsive protein | 74 | 145 | IPR003676 | GO:0009733 | |
| Cma06g00005 | 168 | PANTHER | BNAA02G05090D PROTEIN | 7 | 162 | - | - | |
| Cma06g00005 | 168 | PANTHER | AUXIN-INDUCED PROTEIN-LIKE-RELATED | 7 | 162 | IPR003676 | GO:0009733 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma04g01883 | Cma-Chr4:9707022 | Cma06g00005 | Cma-Chr6:17377 | 6.44E-95 | dispersed | |
| Cma06g00005 | Cma-Chr6:17377 | Cma17g00621 | Cma-Chr17:5294709 | 3.22E-24 | dispersed | |
| Cma06g00005 | Cma-Chr6:17377 | Cma01g01589 | Cma-Chr1:10971844 | 1.48E-24 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma06g00005 | K14488 | - | csv:101207913 | 311.612 |