Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma06g00008 | ATGGAGCAGACTACTCAACATCCTCCCATTCCCATCCCTTTAAATGCTCGCTATGGCGGCCACCACCACCATGACCCCTCCGCCACCTGCAACCACATCATTGCCGCCACATCTGCGGTCAATGGCGGCAATCCACTCCCACCCTTCCACATGGAAATAGATCTCCACCGTAATAACAACAGCAACAATAACAAGAAGCATGTCAAATACAAAGAGTGCCTCAAAAACCATGCTGCCTCCATGGGAGGAAATGCCACGGATGGCTGCGGCGAGTTCATGCCTAGTGGAGAAGAAGGCTCTATTGAAGCACTCACATGCTCCGCGTGCAACTGCCATAGAAACTTCCATCGAAAAGAGATCGACCACCCCCTCCTCGGCCACAAGCTTCTCGTTGGCGGTAAGAACATGATCGCCATGCCTAAGACCACCACGTTCGCCTACCCAACTGCGGCGGGGGCTGGGTTCCTATCATCCAGAGCAATGACAGTACAACCCCACCACATGATAATGTCGTACAACATGCTTGGCGGGGGCGGGGGCGGGGAGGAGCAGGAGGAGGCAGCAGGGGTGAGGGCGTACTCGGGGCAAATGATGAATAAGAAGCGATTCCGAACGAAGTTCACGGGGGAGCAGAAGGAGAGGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCTGAAGGAAGAGGAGAGTGTGGTGCAGCAATTGTGTGAAGAGATTGGAGTGAAGAGGAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCACAATCTTGGCACCAAGGAAACTACTTCCCCTTCCCATTCTCCCACTCCCTTGGATTAA | 828 | 52.78 | MEQTTQHPPIPIPLNARYGGHHHHDPSATCNHIIAATSAVNGGNPLPPFHMEIDLHRNNNSNNNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIDHPLLGHKLLVGGKNMIAMPKTTTFAYPTAAGAGFLSSRAMTVQPHHMIMSYNMLGGGGGGEEQEEAAGVRAYSGQMMNKKRFRTKFTGEQKERMLRFAEKVGWKILKEEESVVQQLCEEIGVKRRVLKVWMHNNKHNLGTKETTSPSHSPTPLD | 275 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 32657 | 33484 | + | CmaCh06G000080.1 | Cma06g00008 | 295562 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma06g00008 | 275 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 69 | 120 | IPR006456 | - | |
| Cma06g00008 | 275 | Pfam | ZF-HD protein dimerisation region | 68 | 120 | IPR006456 | - | |
| Cma06g00008 | 275 | Gene3D | - | 186 | 261 | - | - | |
| Cma06g00008 | 275 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 70 | 119 | IPR006456 | - | |
| Cma06g00008 | 275 | SUPERFAMILY | Homeodomain-like | 192 | 259 | IPR009057 | - | |
| Cma06g00008 | 275 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 200 | 256 | IPR006455 | - | |
| Cma06g00008 | 275 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Cma06g00008 | 275 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 4 | 31 | 262 | - | - | |
| Cma06g00008 | 275 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 31 | 262 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma04g01895 | Cma-Chr4:9889176 | Cma06g00008 | Cma-Chr6:32657 | 6.50E-143 | dispersed | |
| Cma05g00527 | Cma-Chr5:2518379 | Cma06g00008 | Cma-Chr6:32657 | 2.60E-55 | dispersed | |
| Cma06g00008 | Cma-Chr6:32657 | Cma07g00485 | Cma-Chr7:2110438 | 8.33E-54 | dispersed | |
| Cma06g00008 | Cma-Chr6:32657 | Cma03g00832 | Cma-Chr3:6284164 | 5.93E-57 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 35123 | PF04770 | ZF-HD_dimer | 2.60E-29 | No_clan | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma06g00008 | - | - | bhj:120068944 | 423.32 |