Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00017 ATGGGATTCATAGAATGCCTTGGCCGTTTCTTTCAAAATGCAAGGCCTTACATCGCAGTCATCTCCCTCCAATTCGGCTACGCTGGGATGAACATCATCTCCGTCGTCTCCCTCAACCGTGGTATGAGCCATTACGTCCTCGTCGTCTACCGCCACGCCTTTGCCACCGCTGTCATGGCTCCTTTTGCTCTCGTTCTCGAGAGGAAAGTAAGACCCAAGATTACATGGAAGATTTTCATTCAGATGTTTGTTCTCGCTCTTCTTGGGCCACTGATCGATCAGAATTTCTACTACGTCGGACTGAAAATGACATCCCCAACGTACTCTTGCGCCATAAGCAACATGCTTCCTTCGATGACATTCATCATGGCAGTCCTTTGTAGGATGGAGAAGCTGGACTTGAGGAAAGTTAGATGCCAAGCCAAGTTGTTTGGAACAATAGTGACGGTGATGGGAGCCATGTTGATGACATTTTACAAAGGAAGTGTCATCAACTTCTTCTGGACCGAGCAAGCCCGCCACCCGAACTCGCCACCGACGGCGGATGCGGGTGCGCTCAACCACCACCACGACCGAGAGTTCATCAAAGGCTCAATTTTGCTCATCATTGCCACTCTAGCTTGGGCGGGGTTCTTCATTCTCCAAGTCATAACCTTGAGAAAATACACCGCCCATCTTTCTCTCACCACCATGGTTTGCTTTTTGGGAACCCTCCAGGCCATTGTTGTCACCCTCGCTATGGAACACCGCCCCTCCGCCTGGGCCATCGGCTGGGACATGAACCTTCTCGCCGCCGCTTATGCGGGCGTTGTGGCATCTGGGCTGGCGTATTATGTGCAAGGCTTGGTTATGAAGACAAGAGGGCCAGTTTTTGTTACAGCTTTTAGCCCTTTGTTGATGGTGATTGTTGCTTTCATGGGCTCTCTCATCTTGGCTGAGAAGATTTACGTTGGAGGGATAATTGGAGCAGTGGTGATTGTGATGGGGCTGTACTCAGTTTTGTGGGGGAAGTACGAGGAAGGCAAAGAGAAGGAAGTTGGAGAGGGTGTTGAAGAAGCAGTGAAAGGCGGTGAATTGCCTGTAATAAATGAAGGCATTGTTCAAAAGAACTACGAGGGTTTGGCCATTAGTATGCCTGCACCTGTCATGGTCGAGAAGCTTCAAGCCGCTAACGAAGCATAA 1182 49.92 MGFIECLGRFFQNARPYIAVISLQFGYAGMNIISVVSLNRGMSHYVLVVYRHAFATAVMAPFALVLERKVRPKITWKIFIQMFVLALLGPLIDQNFYYVGLKMTSPTYSCAISNMLPSMTFIMAVLCRMEKLDLRKVRCQAKLFGTIVTVMGAMLMTFYKGSVINFFWTEQARHPNSPPTADAGALNHHHDREFIKGSILLIIATLAWAGFFILQVITLRKYTAHLSLTTMVCFLGTLQAIVVTLAMEHRPSAWAIGWDMNLLAAAYAGVVASGLAYYVQGLVMKTRGPVFVTAFSPLLMVIVAFMGSLILAEKIYVGGIIGAVVIVMGLYSVLWGKYEEGKEKEVGEGVEEAVKGGELPVINEGIVQKNYEGLAISMPAPVMVEKLQAANEA 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 119518 121333 + CmaCh06G000170.1 Cma06g00017 295571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00017 393 Pfam EamA-like transporter family 17 157 IPR000620 GO:0016020|GO:0016021
Cma06g00017 393 Pfam EamA-like transporter family 196 334 IPR000620 GO:0016020|GO:0016021
Cma06g00017 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 234 337 - -
Cma06g00017 393 PANTHER WAT1-RELATED PROTEIN 11 368 IPR030184 GO:0016021|GO:0022857
Cma06g00017 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 159 - -
Cma06g00017 393 PANTHER WAT1-RELATED PROTEIN 11 368 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00017 Cma14g00498 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01306 Cma-Chr4:6645135 Cma06g00017 Cma-Chr6:119518 4.60E-161 dispersed
Cma06g00017 Cma-Chr6:119518 Cma18g00826 Cma-Chr18:7215575 1.80E-164 dispersed
Cma14g00500 Cma-Chr14:2443061 Cma06g00017 Cma-Chr6:119518 4.63E-82 dispersed
Cma14g00498 Cma-Chr14:2435324 Cma06g00017 Cma-Chr6:119518 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00017 - - bhj:120090189 620.928