Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00019 ATGCAATTTCTCCGCAAGATTCGGAAACTCATAGAATTCGAAGAAAAACAAGTAGTTCGGTGGCCTCGCATTGACTGCGAAAAGAAACTCAACAACAAGTTGAAGGAAAAAACAGCAGATCAGAAGACCTTACGAAGGCTGGCCCAAAATCGTGAAGCTGCTAGAAAAAGTCGTTTAAGGAAAAAGGCATATGTGCAGCAGCTAGAAAGTAGCAGGCTGAAGCTTACTCAGCTCGAGCAAGAACTTCAGCGAGCCCGTCAGCAGGGTATCTTCATTTCAAGTTCTGGAGACCAAGCTCATTCCATGAGTGGAAATGGTGCACTAGCATTTGATGTAGAATATTCACGTTGGTTAGAGGAGCATAACAGGCTGATAAATGAGCTTAGAGCGGCAGTTAATTCACACGCGGGTGACACTGAACTGCGAACGGTTGTTGATAATGTGACTGCACAGTTCGATGATATTTTCAGGTTGAAAGGCATTGCAGCCAAAGCTGATGTGTTCCACATCTTGTCAGGAATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGCTTCCGTTCATCTGAGATCCTAAAGCTTCTTGTAAGCCAATTGGAGCCTTTGACCGAGCAGCAAGTAGCGGAAATCTGCAACCTGCAACAATTATCACAACAGGCAGAAGATGCTCTCTCACAAGGAATGGATGCATTGCAGCAATCCTTGGCTGAAACGTTGGCCAGTGGCACGCCTGCTACGTCGGGGTCATCAGGTAATGTGGCTAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTTGGAACTCTTGATGGCTTCCTACGCCAGGCCGATAATCTTCGTCAACAAACACTTCAACAAATGCATCGCATATTGACAACCCGTCAATCGGCTCGTGCGCTTCTTGCAATAAACGACTACTTCTCCCGCCTTCGAGCTCTAAGCTCTCTCTGGCTTGCACGGCCACGAGAGTGA 984 47.15 MQFLRKIRKLIEFEEKQVVRWPRIDCEKKLNNKLKEKTADQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGALAFDVEYSRWLEEHNRLINELRAAVNSHAGDTELRTVVDNVTAQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKLLVSQLEPLTEQQVAEICNLQQLSQQAEDALSQGMDALQQSLAETLASGTPATSGSSGNVANYMGQMAMAMGKLGTLDGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 126605 129261 - CmaCh06G000190.1 Cma06g00019 295573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00019 327 ProSiteProfiles DOG1 domain profile. 107 324 IPR025422 GO:0006351|GO:0043565
Cma06g00019 327 SMART brlzneu 38 101 IPR004827 GO:0003700|GO:0006355
Cma06g00019 327 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 32 327 - -
Cma06g00019 327 Gene3D - 40 93 - -
Cma06g00019 327 PANTHER TRANSCRIPTION FACTOR TGA9 32 327 - -
Cma06g00019 327 Pfam Seed dormancy control 125 200 IPR025422 GO:0006351|GO:0043565
Cma06g00019 327 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 45 60 IPR004827 GO:0003700|GO:0006355
Cma06g00019 327 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 40 84 IPR004827 GO:0003700|GO:0006355
Cma06g00019 327 SUPERFAMILY Leucine zipper domain 42 85 IPR046347 GO:0003700|GO:0006355
Cma06g00019 327 Pfam bZIP transcription factor 41 82 IPR004827 GO:0003700|GO:0006355
Cma06g00019 327 Coils Coil 61 88 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00019 Cma-Chr6:126605 Cma06g00025 Cma-Chr6:157073 0 dispersed
Cma06g00019 Cma-Chr6:126605 Cma06g00023 Cma-Chr6:143293 9.08E-110 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35124 PF14144 DOG1 4.60E-30 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00019 K14431 - csv:101219149 532.332