Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00020 ATGGGGTTGCAAATTGGGGATCCGAATACGTGCATCAGGGGCTGCTGCTCCAGCAAATCCATTCCTCTTCATCTTCCACCTTCCGCATTCTCGCTCCTCTCCCCAATTGCCCGAGGGGCGGAGAGTACTGTGTATGAAGGAAGGTTGGATGGTAAAAGAGTTGCTATAAAGAAGCCCATCTTGTCTACTTCCGACGACTTGGACAAGTTTCATAGGGAGCTTCAGATACTATGCGAATTAGATCATCCAGGCATAGTAAAACTTTTCGCAGTCAATGCGAGGCCACCGAACTACTTGTTTTTCTTCGAATTCTATGAGTTTCCGAATCTTGCGGAGAAATTGCATGCTGAAGAATGGAATCCGAGTATCAATCAGGTGCTCACGATTACTATAGAGTTAGCCAAGGCTTTGCAGTATTTGCATAACTTGGGGATTGTGCATAGGGATGTGAAACCAGCAAACGTTCTTCTTGGCAAAGATTTACGTCCATACTTGGCTGATTTTGGTTTAGCAGTACACCAGAAACATCTGAAAGGAATCTCCGCAGAAAACTGGAAGTCATCTGGGAAGCCAACAGGTGGTTTCTATAAGAAAAGCATGGTTGGGACACTCATTTATATGGCACCTGAGATATTGAGAAAGGAAATACATACAGACCTATCAGATGTCTACAGTTTTGGCATCTTAATGAACGAGCTTTTGACTGGTGTTGTTCCATATACTGATCTTCGAACTGAAGCACAGGCCCACACTGTACTGGAAATGAATTATACGGAGCAGCTGCTTACCGCAGCTATTGTCTCAGATGGCTTGCGTCCTGCTCTTCCTAATGATGAGTCTGGCGCACCATCAAGGTTGTTGTCACTTATACGAAGGTGCTGGGATGAAAATCCAAAAAATAGACCATCTTTTTCTGATATAGTTGTGGACCTAGAGTCAATTTGGGAGGACAGAAAGGGTTTAGAATCTGTCACCCCTATGCATCCCAATTTGTGTGGTAGTGTTAGTGATGCTAGTGAAAATGATTATGCATATCAAGAAGATATTAATTGGTCAAATCAGGGCGAACAGTTTTCTAGAAAGGCTTCTAATGCAGATGAGTGTGCTGTGAATGTTTGGCTTGATTCCTCATCCGATCATTCGGCATACCGCCCAATACTTTCTTGGGGATCTTTTTCCACTTGTGGCAGGAGGGAGACCATGGAGGACTCTCATTTCCTCTTGCCTAACATGTGTAACAAAGAAGACATCCATGCTTTTGGAATCTTTGATGGTCATAGAGGTGCAGCAGCTGCTGAGTTTTCAGCTCAAGCTATTCCTGGATTCTTGCAAACGTCATGCTCCACAACAAGTCCTGTGGATGCATTAAAGGAAGCATTTGTAAAAACAGATGTTGAGTTTAGAAAAGAACTCAATTTTTTTCGCAAATCCAAGAAAGTTAAACAGAAAGACTGGCATCCTGGTTGCACTTCTGCTGTTGCTCTAATTGTTAGAGACAGGCTTTTTGTTGCCAATGCTGGTGATTGCAGGACAATATTGTGTCGGGCTGGTGATCCCGTCGTTTTAAGTAAGGATCATGTCGCTAGTTGTGTCGAGGAGCGAGAGCGTGTCATCAAGGCTGGAGGGCAGGTCAAATGGCAAGTTGATACATGGAGGGTTGGTCCGGCTGCTCTTCAGGTGACTCGTTCAATTGGCGACGATGATCTGAAGCCGGCTGTGAGTGCAGAACCTGAGATAACAGAAACTGTTTTGAGTTCACAGGATGATTACCTGGTTATGGGGAGTGATGGGCTATGGGATGCCCTGAGCAACTCTGAGGTGGTGGGTATCATCAGGGACACGGTGAAAGAAGCGGGAATGTGTTCAAAGCGGCTTGCAACAGAAGCAGTAGCCAGGGGGAGCAAGGATAACATTACGGTGTTTTGCATAATGGAGAAGAAGGCTACCCTGGCAGCTGCGATGGATTGGAGACTGAAAATCAAGAACGAAACTGGACAGAAATTTGTCAAGTCTTTGTAA 2019 44.87 MGLQIGDPNTCIRGCCSSKSIPLHLPPSAFSLLSPIARGAESTVYEGRLDGKRVAIKKPILSTSDDLDKFHRELQILCELDHPGIVKLFAVNARPPNYLFFFEFYEFPNLAEKLHAEEWNPSINQVLTITIELAKALQYLHNLGIVHRDVKPANVLLGKDLRPYLADFGLAVHQKHLKGISAENWKSSGKPTGGFYKKSMVGTLIYMAPEILRKEIHTDLSDVYSFGILMNELLTGVVPYTDLRTEAQAHTVLEMNYTEQLLTAAIVSDGLRPALPNDESGAPSRLLSLIRRCWDENPKNRPSFSDIVVDLESIWEDRKGLESVTPMHPNLCGSVSDASENDYAYQEDINWSNQGEQFSRKASNADECAVNVWLDSSSDHSAYRPILSWGSFSTCGRRETMEDSHFLLPNMCNKEDIHAFGIFDGHRGAAAAEFSAQAIPGFLQTSCSTTSPVDALKEAFVKTDVEFRKELNFFRKSKKVKQKDWHPGCTSAVALIVRDRLFVANAGDCRTILCRAGDPVVLSKDHVASCVEERERVIKAGGQVKWQVDTWRVGPAALQVTRSIGDDDLKPAVSAEPEITETVLSSQDDYLVMGSDGLWDALSNSEVVGIIRDTVKEAGMCSKRLATEAVARGSKDNITVFCIMEKKATLAAAMDWRLKIKNETGQKFVKSL 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 128639 133845 + CmaCh06G000200.1 Cma06g00020 295574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00020 672 SMART PP2C_SIG_2 403 645 IPR001932 -
Cma06g00020 672 ProSiteProfiles PPM-type phosphatase domain profile. 388 645 IPR001932 -
Cma06g00020 672 SUPERFAMILY Protein kinase-like (PK-like) 23 340 IPR011009 -
Cma06g00020 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Cma06g00020 672 SUPERFAMILY PP2C-like 381 643 IPR036457 -
Cma06g00020 672 SMART serkin_6 30 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00020 672 Gene3D - 378 649 IPR036457 -
Cma06g00020 672 Pfam Protein kinase domain 33 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00020 672 SMART PP2C_4 378 643 IPR001932 -
Cma06g00020 672 ProSiteProfiles Protein kinase domain profile. 30 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00020 672 PANTHER PROTEIN PHOSPHATASE 2C 1 645 IPR015655 GO:0004722|GO:0006470
Cma06g00020 672 CDD PP2Cc 390 643 IPR001932 -
Cma06g00020 672 Pfam Protein phosphatase 2C 392 638 IPR001932 -
Cma06g00020 672 Gene3D Transferase(Phosphotransferase) domain 1 18 331 - -
Cma06g00020 672 PANTHER - 1 645 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00020 Cma-Chr6:128639 Cma04g02414 Cma-Chr4:16659574 7.92E-42 dispersed
Cma06g00020 Cma-Chr6:128639 Cma01g01681 Cma-Chr1:11465044 1.80E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68609 PF00069 Pkinase 1.00E-45 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00020 - - cmos:111440856 1329.31