Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00023 ATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGCTTCCGTTCATCTGAGATCCTAAAGCTTCTTGTAAGCCAATTGGAGCCTTTGACCGAGCAGCAAGTAGCGGAAATCTGCAACCTGCAACAATTATCACAACAGGCAGAAGATGCTCTCTCACAAGGAATGGATGCATTGCAGCAATCCTTGGCTGAAACGTTGGCCAGTGGCACGCCTGCTACGTCGGGGTCATCAGGTAATGTGGCTAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTTGGAACTCTTGATGGCTTCCTACGCCAGGCCGATAATCTTCGTCAACAAACACTTCAACAAATGCATCGCATATTGACAACCCGTCAATCGGCTCGTGCGCTTCTTGCAATAAACGACTACTTCTCCCGCCTTCGAGCTCTAAGCTCTCTCTGGCTTGCACGGCCACGAGAGTGA 465 50.11 MWKTPAERCFLWIGGFRSSEILKLLVSQLEPLTEQQVAEICNLQQLSQQAEDALSQGMDALQQSLAETLASGTPATSGSSGNVANYMGQMAMAMGKLGTLDGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 143293 143979 - CmaCh06G000230.1 Cma06g00023 295577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00023 154 ProSiteProfiles DOG1 domain profile. 1 151 IPR025422 GO:0006351|GO:0043565
Cma06g00023 154 Pfam Seed dormancy control 1 27 IPR025422 GO:0006351|GO:0043565
Cma06g00023 154 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 1 154 - -
Cma06g00023 154 PANTHER TRANSCRIPTION FACTOR TGA9 1 154 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00023 Cma-Chr6:143293 Cma14g00509 Cma-Chr14:2477165 2.16E-99 dispersed
Cma06g00016 Cma-Chr6:102301 Cma06g00023 Cma-Chr6:143293 1.05E-60 proximal
Cma06g00019 Cma-Chr6:126605 Cma06g00023 Cma-Chr6:143293 9.08E-110 proximal
Cma06g00023 Cma-Chr6:143293 Cma06g00025 Cma-Chr6:157073 6.85E-109 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00023 K14431 - csv:101219149 275.789