Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma06g00024 | ATGGCTGCCATTGTTGCATGGGGAAAGCTGAAGAACGTCCAAGAAGCAGAGGAAATTTTTGATAGAGTTTTAAAAACATGGAAGAAGCTTTCCTCGAAACAATACTCTACCATGTTGAAGGTCTATGCAGACAATAAGATGCTGACGAAGGGCAAGGATCTAGTCAAGCAGATGGCAGACAGCGGTTGCCGAATCGGTCCATTAACATGGGATGCAGTTGTGAAACTCTATGTGGAAGCTGGGGAGGTAGAAAAGGCAGATTCTTTCTTGCAGAAGGCAGTCCAGAAAAACCAGATGAAGCCATTGTTTACCTCTTACATGGTTATCCTGGATCAGTATGCAAGGAGGGGTGACGTCCACAATGCAGAGAAAATGTTTCATAGGATGAGACTATCAGGTTACGTGGCTAGATTCAGCCAGTTTCAAGCTCTAATACAGGCATACATTAATGCCAAGGCTCCAGCCTACGGCATGAAAGAGAGAATGAAGGCAGATAATGTGTTTCCAAACAAAGCTTTGGCAGGAAAATTAGCCCAAATCGATGCATTCAGGAAGACAGCAGTGTCGGATTTACTTGACTGA | 582 | 44.16 | MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMADSGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVHNAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQIDAFRKTAVSDLLD | 193 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 156257 | 156838 | + | CmaCh06G000240.1 | Cma06g00024 | 295578 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma06g00024 | 193 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 102 | 136 | IPR002885 | - | |
| Cma06g00024 | 193 | PANTHER | OS01G0280400 PROTEIN | 1 | 193 | - | - | |
| Cma06g00024 | 193 | TIGRFAM | PPR: pentatricopeptide repeat domain | 35 | 64 | IPR002885 | - | |
| Cma06g00024 | 193 | TIGRFAM | PPR: pentatricopeptide repeat domain | 105 | 135 | IPR002885 | - | |
| Cma06g00024 | 193 | Gene3D | Tetratricopeptide repeat domain | 1 | 190 | IPR011990 | GO:0005515 | |
| Cma06g00024 | 193 | PANTHER | OS12G0527900 PROTEIN | 1 | 193 | - | - | |
| Cma06g00024 | 193 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 31 | 65 | IPR002885 | - | |
| Cma06g00024 | 193 | Pfam | Pentacotripeptide-repeat region of PRORP | 9 | 149 | IPR033443 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma06g00024 | Cma-Chr6:156257 | Cma14g00508 | Cma-Chr14:2475786 | 7.76E-108 | dispersed | |
| Cma06g00022 | Cma-Chr6:139575 | Cma06g00024 | Cma-Chr6:156257 | 1.10E-137 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma06g00024 | - | - | cmax:111470066 | 382.489 |