Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00025 ATGGTCTTTTTCTCTGTGATTTTCAGGGGTGCAGAGGGAAGCTCTATTCCGTCGTCTCGGATCTCAGACTTGAGAACACTTGAGCAAACTCTTGGATTTCACATAGAAGATGTAGACCTTTCTAGAAATCCTTTGTATAATCAGATAAAGGCGAATAGTTCAGCTCTGAACAACGTCCAGTTTGGTTCTTTAATTAAGACACTTGTATCCACTGATGTAAATTTGCCAACTGCTATCATGGGGTCTCAAACGTTGCCATTACAGAAAGAATCAAATCCAAATTTGGTTTCTACATCTAGCGGTCCTCGTGAAAACTGGGGAGAGTCTAACGTGGCAGATACGAGCACAAGAACTGATTCCTCTACAGATGACGATGACAAAAGTCAAAGGCTTGACAAAGATCAAGGAAACTCACTTATGGCATATGATTCTAACAACAAGTTGAAGGAAAAAACAGCAGATCAGAAGACCTTACGAAGGCTGGCCCAAAATCGTGAAGCTGCTAGAAAAAGTCGTTTAAGGAAAAAGGCATATGTGCAGCAGCTAGAAAGTAGCAGGCTGAAGCTTACTCAGCTCGAGCAAGAACTTCAGCGAGCCCGTCAGCAGGGTATCTTCATTTCAAGTTCTGGAGACCAAGCTCATTCCATGAGTGGAAATGGTGCACTAGCATTTGATGTAGAATATTCACGTTGGTTAGAGGAGCATAACAGGCTGATAAATGAGCTTAGAGCGGCAGTTAATTCACACGCGGGTGACACTGAACTGCGAACGGTTGTTGATAATGTGACTGCACAGTTCGATGATATTTTCAGGTTGAAAGGCATTGCAGCCAAAGCTGATGTGTTCCACATCTTGTCAGGAATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGCTTCCGTTCATCTGAGATCCTAAAGCTTCTTGTAAGCCAATTGGAGCCTTTGACCGAGCAGCAAGTAGCGGAAATCTGCAACCTGCAACAATTATCACAACAGGCAGAAGATGCTCTCTCACAAGGAATGGATGCATTGCAGCAATCCTTGGCTGAAACGTTGGCCAGTGGCACGCCTGCTACGTCGGGGTCATCAGGTAATGTGGCTAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTTGGAACTCTTGATGGCTTCCTACGCCAGGCCGATAATCTTCGTCAACAAACACTTCAACAAATGCATCGCATATTGACAACCCGTCAATCGGCTCGTGCGCTTCTTGCAATAAACGACTACTTCTCCCGCCTTCGAGCTCTAAGCTCTCTCTGGCTTGCACGGCCACGAGAGTGA 1326 45.48 MVFFSVIFRGAEGSSIPSSRISDLRTLEQTLGFHIEDVDLSRNPLYNQIKANSSALNNVQFGSLIKTLVSTDVNLPTAIMGSQTLPLQKESNPNLVSTSSGPRENWGESNVADTSTRTDSSTDDDDKSQRLDKDQGNSLMAYDSNNKLKEKTADQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGALAFDVEYSRWLEEHNRLINELRAAVNSHAGDTELRTVVDNVTAQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKLLVSQLEPLTEQQVAEICNLQQLSQQAEDALSQGMDALQQSLAETLASGTPATSGSSGNVANYMGQMAMAMGKLGTLDGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 157073 160643 - CmaCh06G000250.1 Cma06g00025 295579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00025 441 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 159 174 IPR004827 GO:0003700|GO:0006355
Cma06g00025 441 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 47 441 - -
Cma06g00025 441 ProSiteProfiles DOG1 domain profile. 221 438 IPR025422 GO:0006351|GO:0043565
Cma06g00025 441 MobiDBLite consensus disorder prediction 118 133 - -
Cma06g00025 441 MobiDBLite consensus disorder prediction 84 117 - -
Cma06g00025 441 SMART brlzneu 152 215 IPR004827 GO:0003700|GO:0006355
Cma06g00025 441 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 154 198 IPR004827 GO:0003700|GO:0006355
Cma06g00025 441 Coils Coil 175 202 - -
Cma06g00025 441 Gene3D - 155 207 - -
Cma06g00025 441 Pfam Seed dormancy control 239 314 IPR025422 GO:0006351|GO:0043565
Cma06g00025 441 MobiDBLite consensus disorder prediction 84 156 - -
Cma06g00025 441 Pfam bZIP transcription factor 155 196 IPR004827 GO:0003700|GO:0006355
Cma06g00025 441 CDD bZIP_HBP1b-like 156 208 - -
Cma06g00025 441 SUPERFAMILY Leucine zipper domain 156 199 IPR046347 GO:0003700|GO:0006355
Cma06g00025 441 PANTHER TRANSCRIPTION FACTOR TGA9 47 441 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01321 Cma-Chr4:6717277 Cma06g00025 Cma-Chr6:157073 0 dispersed
Cma04g02060 Cma-Chr4:13726057 Cma06g00025 Cma-Chr6:157073 4.78E-163 dispersed
Cma06g00019 Cma-Chr6:126605 Cma06g00025 Cma-Chr6:157073 0 dispersed
Cma06g00025 Cma-Chr6:157073 Cma14g00509 Cma-Chr14:2477165 0 dispersed
Cma16g00670 Cma-Chr16:3493420 Cma06g00025 Cma-Chr6:157073 5.87E-101 dispersed
Cma18g00660 Cma-Chr18:6016786 Cma06g00025 Cma-Chr6:157073 4.48E-111 dispersed
Cma20g00170 Cma-Chr20:819556 Cma06g00025 Cma-Chr6:157073 1.21E-119 dispersed
Cma06g00023 Cma-Chr6:143293 Cma06g00025 Cma-Chr6:157073 6.85E-109 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35125 PF14144 DOG1 7.50E-30 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00025 K14431 - csv:101219149 744.962