Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00034 ATGAGGGAAGATGATTCTAATTGGTTTTCAAAATGGGATCAGGAGCTTCCCTCTCCTGATGAATTGATGCCTCTTTCCCAAACCCTTATCACTCCTGATCTTGCTTTGGCATTTGATATCAGAAACCCAGATAGTTCCATCAACAACAACAACAACAACAACCACCACCCACCGCCTCCGCCGCCTCCGGTGCCAATCCAGCCGAGTTCGGCCGATTTTGGGGATTCTGGTGATTTTGTGTCTGGCGCCGGCGCTGGAGAAGAACCTGCGCGGACCCTGAAGAGGCCGCGCCTGGTCTGGACTCCACAGCTCCACAAGCGATTTGTCGACGCGGTCGGCCATTTGGGAATAAAAAATGCTGTACCTAAAACCATAATGCAGTTGATGAGCGTGGATGGGTTAACTCGTGAGAACGTGGCTAGCCATTTGCAGAAATATCGCCTCTATTTGAAGCGTATGCAGGGGATTCCCGGCGGCAGTGGCGGCGGAGTCAGTGGCGGTGCTGGATTAGTTTCACCCGTTTCAGATCCTGCTACCGACCATTTGTTCGCCAGCTCTCCAGTTCCGCCGCATTTTCTTCACTCCTCTCGGACTAATTCCGACCATTTCCTGCCGTTTGTGCCGGTCGGAGCTCTGCAGCACCACCACCAGATGGCCGCCGCCGCTGCCGCTCAATACCACCGACAAGTAGCCCATTTTGGGTCGCCGCCGAATGGGCAGTTTGAGCATCCGTTTTTGGCTCGGCCTGTTCACCGGATTGGGACCCCTGTGACTACCCCGGCGACGAATTACAGCGAGGATTTGGATTCGAGTAATGGAACAGGAGGGAGGAAGAACTCTCTGTATCTCCGTGACGTTGGTGTTGCCGTCGTCTTCTCCGGCGAAAACAAGGGCGGTCGTCAGTTGCAGAGTCGAAGGCAAAATGGATTATATATTATGCTAAAGAGGTAA 951 53.42 MREDDSNWFSKWDQELPSPDELMPLSQTLITPDLALAFDIRNPDSSINNNNNNNHHPPPPPPPVPIQPSSADFGDSGDFVSGAGAGEEPARTLKRPRLVWTPQLHKRFVDAVGHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGIPGGSGGGVSGGAGLVSPVSDPATDHLFASSPVPPHFLHSSRTNSDHFLPFVPVGALQHHHQMAAAAAAQYHRQVAHFGSPPNGQFEHPFLARPVHRIGTPVTTPATNYSEDLDSSNGTGGRKNSLYLRDVGVAVVFSGENKGGRQLQSRRQNGLYIMLKR 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 206551 207562 + CmaCh06G000340.1 Cma06g00034 295588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00034 316 MobiDBLite consensus disorder prediction 1 24 - -
Cma06g00034 316 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 273 - -
Cma06g00034 316 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 273 IPR044841 GO:0003700|GO:0006355
Cma06g00034 316 MobiDBLite consensus disorder prediction 256 277 - -
Cma06g00034 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 100 151 IPR017930 -
Cma06g00034 316 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 96 148 IPR006447 GO:0003677
Cma06g00034 316 MobiDBLite consensus disorder prediction 41 94 - -
Cma06g00034 316 Gene3D - 92 154 - -
Cma06g00034 316 Pfam Myb-like DNA-binding domain 99 147 IPR001005 -
Cma06g00034 316 SUPERFAMILY Homeodomain-like 92 152 IPR009057 -
Cma06g00034 316 MobiDBLite consensus disorder prediction 54 68 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00619 Cma-Chr1:3233814 Cma06g00034 Cma-Chr6:206551 6.91E-41 dispersed
Cma03g00158 Cma-Chr3:2122692 Cma06g00034 Cma-Chr6:206551 1.40E-110 dispersed
Cma06g00034 Cma-Chr6:206551 Cma07g01099 Cma-Chr7:5948982 5.39E-113 dispersed
Cma14g00494 Cma-Chr14:2422084 Cma06g00034 Cma-Chr6:206551 1.78E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35126 PF00249 Myb_DNA-binding 1.80E-07 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00034 - - csv:101216059 414.846