Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma06g00038 | ATGGCTGACCCAGTTGCGCAAGTTTGGCCTTCTGATCAAAACCCTAATTCCACTACTTACGCTTCCGAATTTGATTCCCTCCAAATTCCGCCTCTCGACTCTCTTTTTTTCTCCGATGCCAATTCTGCCGCCCCTAGTGACCCCTTTGTTTATTCCACGCCTTCGAATTTGGGATTCGAGGAAAATGACGATTTTGAGCTCACTTTTGATGATCTTGACGACCTTTACCTCCCATCTGAGGCTGACGATTTCCTCATCTTGGAGAATTTGGATCAAACTACCAATTCTCAGGATTCGGCTACTGATGTTCCGCCCCAGCCTGGCCGGGATGCTGCTGCTGACGGCGCTCGTGTTCGCGTTTGCAGTTCTGAAGCGTCCCCGGGATCGGGGAGCTCTGCGGTTTCTTGTGAGCAGTCTCCCAATGACGGTAAGTTTATTGACTGTCAATCTTCCAAAATACCAACTGCGGATAGCGGTTGCTTTTCGACTGACTCCGGGGGTTGGGACTCAAAGGATCCGAGGATTGTGAACTGTCCCTCTCCGGAGCATGGTGGTGGTAGTGAACAGGAGTTCTCGGGCGAGCCGGCGTCGTCTCAGGGCTCGGGTTCTGGAAATTGTGGTTCCGGCGTCTCTGAAGGGATAACTTGCCCATCTTCCAATGGGGAGTATTACGATGTCATTGTCGATCAGAAGATTAAATCAGAGGAAATAGGAAAAATTTGCATGCCGAAGAGGAAGAAAGACCTGGATGAAGGAAACCCGGATTTGAGATCTGCCAAGTATCGAAGGTCATCTGAACCTGTAGAAAGTTCCAATCCCCAATTGAGTTCCTGTGCTCTAAATGAGGATGAAGAGAAGAGGAAGGCGAGGTTGATGAGGAATAGAGAGAGTGCGCAGCTTTCCAGGCAGAGGAAGAAGCATTATGTGGAGGAGTTGGAGGATAAATTGAGAGCTATGCATTCAACCATTGCTGAATTGAATAGTAAGATATCATATGTGATGGCTGAGAATGCAGGGCTGAGACAGCAGCTGAGTGGTAGTGGTATGTGTCAGCCTCCTCCTCCTCCTGGTATGTATCCTCATCCCTCAATGGCCCCAATGTCTTATCCGTGGATGCCATGTCCTCCGTATGTTGTTAAACCGCAAGGGTCTCAGGTCCCTCTGGTTCCAATTCCGAGATTAAAGCCCCAACAGCCTGCCCCTGCAGCAAAGGGGAAAAGGAATGTGAGTAAGAAGGCTGAGGGAAGAACTAAGAAGGTTGCGAGTGTTAGTTTTCTGGGTCTGTTGTTCTTTATTATGCTGTTTGGTGGTCTAGTTCCTATAGTGAATCTCAGATTTAGAAATGTTGGAGGAGGAGTTCCTGGCACGTTAGCATTTGTTGGTGATAGGTTATACAATCAAAACCGAGGAAGGGTTTTGAGAGTCGATAAGTATTCGAATTTATCTAATGGTGTGAATGTAAGAACTCCTTGTGGGAAATCTGATACTTTGAACCTCTTACAATGTGAGGAAATTCATAGGAAAGGCCGAGACTTGAAATTCGATCAACAACTAAAAGGATCGCAGCGTATGCATGATTCAGATGAGTCTAGTAAGCTTGGAAATGCTAGTGAACCTCTTGTTGCTTCTTTATACGTCCCAAGGAATGACAAGTTAGTGAAGATTGATGGAAACTTAATAATCCATTCTTTCTTGGCAAGCGAGAAAGCTATGGCCTCCAGCAGGGCTTCTGATAAGGACAAGGGTAGGGAGACTGGACTTGCGATTCCTAGAGATCTTAGTCCAGCCATCACCATCCCCAACATCAGGGAAAGTGGTGGTAAACATCCTCATGCGTATAGAAATCCTGCCGAACAGCCAAAGGCACTTACTTCAGGTTCAGCCAACAATTTAAAGGACCATATCAAGGCGACCGCAGCTGATGGTAAACTCCAACAGTGGTTCCGAGAAGGTCTTGCAGGACCGATGTTGAGTTCTGGCTTGTGCACCGAAGTGTTCCAGTTCGACGTTTCCTCAACATCTCCAGGAGCAATAATTCCAGCATCGTCAATTGCCAATACTTCTGGAACACATCGTAAGAATGCTACTCAACTGAATAAGGGAAGGAATAGGAGAATCCTGGGTGGTCTTCCAGTTCCCCTAGGTGGATCAAGTTTCAACATCACAGAAGAACCTGTTGGAAACCCACGCAAAGACAGCTTTCCAGGTAACAACAAAACAGCTTCGTCTATCGTAGTTTCTGTGCTCATTGATCCAAGGGAAGCTGGGGACAGTGAAGTTGACGGCGTGATAACGCCGAAGTCGATTTCGAGAATATTTGTCGTTGTGTTGCTGGATAGTGTAAAGTATGTCACGTATTCATGCGTCCTCCCACGTTCGGGTCCTCACCTTGTGTCTACTTAA | 2403 | 47.02 | MADPVAQVWPSDQNPNSTTYASEFDSLQIPPLDSLFFSDANSAAPSDPFVYSTPSNLGFEENDDFELTFDDLDDLYLPSEADDFLILENLDQTTNSQDSATDVPPQPGRDAAADGARVRVCSSEASPGSGSSAVSCEQSPNDGKFIDCQSSKIPTADSGCFSTDSGGWDSKDPRIVNCPSPEHGGGSEQEFSGEPASSQGSGSGNCGSGVSEGITCPSSNGEYYDVIVDQKIKSEEIGKICMPKRKKDLDEGNPDLRSAKYRRSSEPVESSNPQLSSCALNEDEEKRKARLMRNRESAQLSRQRKKHYVEELEDKLRAMHSTIAELNSKISYVMAENAGLRQQLSGSGMCQPPPPPGMYPHPSMAPMSYPWMPCPPYVVKPQGSQVPLVPIPRLKPQQPAPAAKGKRNVSKKAEGRTKKVASVSFLGLLFFIMLFGGLVPIVNLRFRNVGGGVPGTLAFVGDRLYNQNRGRVLRVDKYSNLSNGVNVRTPCGKSDTLNLLQCEEIHRKGRDLKFDQQLKGSQRMHDSDESSKLGNASEPLVASLYVPRNDKLVKIDGNLIIHSFLASEKAMASSRASDKDKGRETGLAIPRDLSPAITIPNIRESGGKHPHAYRNPAEQPKALTSGSANNLKDHIKATAADGKLQQWFREGLAGPMLSSGLCTEVFQFDVSSTSPGAIIPASSIANTSGTHRKNATQLNKGRNRRILGGLPVPLGGSSFNITEEPVGNPRKDSFPGNNKTASSIVVSVLIDPREAGDSEVDGVITPKSISRIFVVVLLDSVKYVTYSCVLPRSGPHLVST | 800 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 215083 | 218600 | + | CmaCh06G000380.1 | Cma06g00038 | 295592 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma06g00038 | 800 | CDD | bZIP_HY5-like | 287 | 338 | - | - | |
Cma06g00038 | 800 | MobiDBLite | consensus disorder prediction | 89 | 103 | - | - | |
Cma06g00038 | 800 | PANTHER | BASIC-LEUCINE ZIPPER TRANSCRIPTION FACTOR F-RELATED | 11 | 799 | - | - | |
Cma06g00038 | 800 | PANTHER | BASIC-LEUCINE ZIPPER TRANSCRIPTION FACTOR F-RELATED | 11 | 799 | - | - | |
Cma06g00038 | 800 | MobiDBLite | consensus disorder prediction | 395 | 414 | - | - | |
Cma06g00038 | 800 | MobiDBLite | consensus disorder prediction | 244 | 264 | - | - | |
Cma06g00038 | 800 | Pfam | bZIP transcription factor | 283 | 344 | IPR004827 | GO:0003700|GO:0006355 | |
Cma06g00038 | 800 | MobiDBLite | consensus disorder prediction | 124 | 165 | - | - | |
Cma06g00038 | 800 | MobiDBLite | consensus disorder prediction | 573 | 587 | - | - | |
Cma06g00038 | 800 | MobiDBLite | consensus disorder prediction | 513 | 534 | - | - | |
Cma06g00038 | 800 | Gene3D | - | 284 | 350 | - | - | |
Cma06g00038 | 800 | SUPERFAMILY | Leucine zipper domain | 286 | 344 | IPR046347 | GO:0003700|GO:0006355 | |
Cma06g00038 | 800 | SMART | brlzneu | 282 | 346 | IPR004827 | GO:0003700|GO:0006355 | |
Cma06g00038 | 800 | MobiDBLite | consensus disorder prediction | 598 | 627 | - | - | |
Cma06g00038 | 800 | MobiDBLite | consensus disorder prediction | 244 | 283 | - | - | |
Cma06g00038 | 800 | MobiDBLite | consensus disorder prediction | 513 | 532 | - | - | |
Cma06g00038 | 800 | Coils | Coil | 281 | 301 | - | - | |
Cma06g00038 | 800 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 284 | 344 | IPR004827 | GO:0003700|GO:0006355 | |
Cma06g00038 | 800 | Coils | Coil | 309 | 329 | - | - | |
Cma06g00038 | 800 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cma06g00038 | 800 | MobiDBLite | consensus disorder prediction | 89 | 211 | - | - | |
Cma06g00038 | 800 | MobiDBLite | consensus disorder prediction | 571 | 590 | - | - | |
Cma06g00038 | 800 | MobiDBLite | consensus disorder prediction | 265 | 279 | - | - | |
Cma06g00038 | 800 | MobiDBLite | consensus disorder prediction | 191 | 211 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g00390 | Cma-Chr5:1712978 | Cma06g00038 | Cma-Chr6:215083 | 1.92E-07 | dispersed | |
Cma06g00038 | Cma-Chr6:215083 | Cma12g00329 | Cma-Chr12:1688568 | 4.15E-07 | dispersed | |
Cma09g00015 | Cma-Chr9:90333 | Cma06g00038 | Cma-Chr6:215083 | 1.24E-06 | transposed | |
Cma14g00491 | Cma-Chr14:2411050 | Cma06g00038 | Cma-Chr6:215083 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35127 | PF00170 | bZIP_1 | 2.80E-10 | CL0018 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma06g00038 | K25783 | - | csv:101215342 | 1105.12 |