Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00038 ATGGCTGACCCAGTTGCGCAAGTTTGGCCTTCTGATCAAAACCCTAATTCCACTACTTACGCTTCCGAATTTGATTCCCTCCAAATTCCGCCTCTCGACTCTCTTTTTTTCTCCGATGCCAATTCTGCCGCCCCTAGTGACCCCTTTGTTTATTCCACGCCTTCGAATTTGGGATTCGAGGAAAATGACGATTTTGAGCTCACTTTTGATGATCTTGACGACCTTTACCTCCCATCTGAGGCTGACGATTTCCTCATCTTGGAGAATTTGGATCAAACTACCAATTCTCAGGATTCGGCTACTGATGTTCCGCCCCAGCCTGGCCGGGATGCTGCTGCTGACGGCGCTCGTGTTCGCGTTTGCAGTTCTGAAGCGTCCCCGGGATCGGGGAGCTCTGCGGTTTCTTGTGAGCAGTCTCCCAATGACGGTAAGTTTATTGACTGTCAATCTTCCAAAATACCAACTGCGGATAGCGGTTGCTTTTCGACTGACTCCGGGGGTTGGGACTCAAAGGATCCGAGGATTGTGAACTGTCCCTCTCCGGAGCATGGTGGTGGTAGTGAACAGGAGTTCTCGGGCGAGCCGGCGTCGTCTCAGGGCTCGGGTTCTGGAAATTGTGGTTCCGGCGTCTCTGAAGGGATAACTTGCCCATCTTCCAATGGGGAGTATTACGATGTCATTGTCGATCAGAAGATTAAATCAGAGGAAATAGGAAAAATTTGCATGCCGAAGAGGAAGAAAGACCTGGATGAAGGAAACCCGGATTTGAGATCTGCCAAGTATCGAAGGTCATCTGAACCTGTAGAAAGTTCCAATCCCCAATTGAGTTCCTGTGCTCTAAATGAGGATGAAGAGAAGAGGAAGGCGAGGTTGATGAGGAATAGAGAGAGTGCGCAGCTTTCCAGGCAGAGGAAGAAGCATTATGTGGAGGAGTTGGAGGATAAATTGAGAGCTATGCATTCAACCATTGCTGAATTGAATAGTAAGATATCATATGTGATGGCTGAGAATGCAGGGCTGAGACAGCAGCTGAGTGGTAGTGGTATGTGTCAGCCTCCTCCTCCTCCTGGTATGTATCCTCATCCCTCAATGGCCCCAATGTCTTATCCGTGGATGCCATGTCCTCCGTATGTTGTTAAACCGCAAGGGTCTCAGGTCCCTCTGGTTCCAATTCCGAGATTAAAGCCCCAACAGCCTGCCCCTGCAGCAAAGGGGAAAAGGAATGTGAGTAAGAAGGCTGAGGGAAGAACTAAGAAGGTTGCGAGTGTTAGTTTTCTGGGTCTGTTGTTCTTTATTATGCTGTTTGGTGGTCTAGTTCCTATAGTGAATCTCAGATTTAGAAATGTTGGAGGAGGAGTTCCTGGCACGTTAGCATTTGTTGGTGATAGGTTATACAATCAAAACCGAGGAAGGGTTTTGAGAGTCGATAAGTATTCGAATTTATCTAATGGTGTGAATGTAAGAACTCCTTGTGGGAAATCTGATACTTTGAACCTCTTACAATGTGAGGAAATTCATAGGAAAGGCCGAGACTTGAAATTCGATCAACAACTAAAAGGATCGCAGCGTATGCATGATTCAGATGAGTCTAGTAAGCTTGGAAATGCTAGTGAACCTCTTGTTGCTTCTTTATACGTCCCAAGGAATGACAAGTTAGTGAAGATTGATGGAAACTTAATAATCCATTCTTTCTTGGCAAGCGAGAAAGCTATGGCCTCCAGCAGGGCTTCTGATAAGGACAAGGGTAGGGAGACTGGACTTGCGATTCCTAGAGATCTTAGTCCAGCCATCACCATCCCCAACATCAGGGAAAGTGGTGGTAAACATCCTCATGCGTATAGAAATCCTGCCGAACAGCCAAAGGCACTTACTTCAGGTTCAGCCAACAATTTAAAGGACCATATCAAGGCGACCGCAGCTGATGGTAAACTCCAACAGTGGTTCCGAGAAGGTCTTGCAGGACCGATGTTGAGTTCTGGCTTGTGCACCGAAGTGTTCCAGTTCGACGTTTCCTCAACATCTCCAGGAGCAATAATTCCAGCATCGTCAATTGCCAATACTTCTGGAACACATCGTAAGAATGCTACTCAACTGAATAAGGGAAGGAATAGGAGAATCCTGGGTGGTCTTCCAGTTCCCCTAGGTGGATCAAGTTTCAACATCACAGAAGAACCTGTTGGAAACCCACGCAAAGACAGCTTTCCAGGTAACAACAAAACAGCTTCGTCTATCGTAGTTTCTGTGCTCATTGATCCAAGGGAAGCTGGGGACAGTGAAGTTGACGGCGTGATAACGCCGAAGTCGATTTCGAGAATATTTGTCGTTGTGTTGCTGGATAGTGTAAAGTATGTCACGTATTCATGCGTCCTCCCACGTTCGGGTCCTCACCTTGTGTCTACTTAA 2403 47.02 MADPVAQVWPSDQNPNSTTYASEFDSLQIPPLDSLFFSDANSAAPSDPFVYSTPSNLGFEENDDFELTFDDLDDLYLPSEADDFLILENLDQTTNSQDSATDVPPQPGRDAAADGARVRVCSSEASPGSGSSAVSCEQSPNDGKFIDCQSSKIPTADSGCFSTDSGGWDSKDPRIVNCPSPEHGGGSEQEFSGEPASSQGSGSGNCGSGVSEGITCPSSNGEYYDVIVDQKIKSEEIGKICMPKRKKDLDEGNPDLRSAKYRRSSEPVESSNPQLSSCALNEDEEKRKARLMRNRESAQLSRQRKKHYVEELEDKLRAMHSTIAELNSKISYVMAENAGLRQQLSGSGMCQPPPPPGMYPHPSMAPMSYPWMPCPPYVVKPQGSQVPLVPIPRLKPQQPAPAAKGKRNVSKKAEGRTKKVASVSFLGLLFFIMLFGGLVPIVNLRFRNVGGGVPGTLAFVGDRLYNQNRGRVLRVDKYSNLSNGVNVRTPCGKSDTLNLLQCEEIHRKGRDLKFDQQLKGSQRMHDSDESSKLGNASEPLVASLYVPRNDKLVKIDGNLIIHSFLASEKAMASSRASDKDKGRETGLAIPRDLSPAITIPNIRESGGKHPHAYRNPAEQPKALTSGSANNLKDHIKATAADGKLQQWFREGLAGPMLSSGLCTEVFQFDVSSTSPGAIIPASSIANTSGTHRKNATQLNKGRNRRILGGLPVPLGGSSFNITEEPVGNPRKDSFPGNNKTASSIVVSVLIDPREAGDSEVDGVITPKSISRIFVVVLLDSVKYVTYSCVLPRSGPHLVST 800
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 215083 218600 + CmaCh06G000380.1 Cma06g00038 295592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00038 800 CDD bZIP_HY5-like 287 338 - -
Cma06g00038 800 MobiDBLite consensus disorder prediction 89 103 - -
Cma06g00038 800 PANTHER BASIC-LEUCINE ZIPPER TRANSCRIPTION FACTOR F-RELATED 11 799 - -
Cma06g00038 800 PANTHER BASIC-LEUCINE ZIPPER TRANSCRIPTION FACTOR F-RELATED 11 799 - -
Cma06g00038 800 MobiDBLite consensus disorder prediction 395 414 - -
Cma06g00038 800 MobiDBLite consensus disorder prediction 244 264 - -
Cma06g00038 800 Pfam bZIP transcription factor 283 344 IPR004827 GO:0003700|GO:0006355
Cma06g00038 800 MobiDBLite consensus disorder prediction 124 165 - -
Cma06g00038 800 MobiDBLite consensus disorder prediction 573 587 - -
Cma06g00038 800 MobiDBLite consensus disorder prediction 513 534 - -
Cma06g00038 800 Gene3D - 284 350 - -
Cma06g00038 800 SUPERFAMILY Leucine zipper domain 286 344 IPR046347 GO:0003700|GO:0006355
Cma06g00038 800 SMART brlzneu 282 346 IPR004827 GO:0003700|GO:0006355
Cma06g00038 800 MobiDBLite consensus disorder prediction 598 627 - -
Cma06g00038 800 MobiDBLite consensus disorder prediction 244 283 - -
Cma06g00038 800 MobiDBLite consensus disorder prediction 513 532 - -
Cma06g00038 800 Coils Coil 281 301 - -
Cma06g00038 800 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 284 344 IPR004827 GO:0003700|GO:0006355
Cma06g00038 800 Coils Coil 309 329 - -
Cma06g00038 800 MobiDBLite consensus disorder prediction 1 21 - -
Cma06g00038 800 MobiDBLite consensus disorder prediction 89 211 - -
Cma06g00038 800 MobiDBLite consensus disorder prediction 571 590 - -
Cma06g00038 800 MobiDBLite consensus disorder prediction 265 279 - -
Cma06g00038 800 MobiDBLite consensus disorder prediction 191 211 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00390 Cma-Chr5:1712978 Cma06g00038 Cma-Chr6:215083 1.92E-07 dispersed
Cma06g00038 Cma-Chr6:215083 Cma12g00329 Cma-Chr12:1688568 4.15E-07 dispersed
Cma09g00015 Cma-Chr9:90333 Cma06g00038 Cma-Chr6:215083 1.24E-06 transposed
Cma14g00491 Cma-Chr14:2411050 Cma06g00038 Cma-Chr6:215083 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35127 PF00170 bZIP_1 2.80E-10 CL0018 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00038 K25783 - csv:101215342 1105.12